ggKbase home page

SCNpilot_expt_500_bf_scaffold_140

Search features with annotation key words

Displaying items 1-30 of 193 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_140_1
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..880)
DNA (879bp) protein (293aa)
YadA-like protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AAS2_COLFT
YadA-like protein
YadA-like protein {ECO:0000313|EMBL:AEK63446.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_expt_500_bf_scaffold_140_2
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1047..2633
DNA (1587bp) protein (529aa)
histidine kinase/response regulator hybrid protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262A38E rbh
Histidine kinase {ECO:0000313|EMBL:AKC80652.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_140_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2620..3366)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E3CEAA
PhoP family transcriptional regulator {ECO:0000313|EMBL:AIF46570.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
two-component response regulator
SCNpilot_expt_500_bf_scaffold_140_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3558..6239
DNA (2682bp) protein (894aa)
Aminopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYP6_9GAMM rbh
aminopeptidase N rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_140_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6401..7369
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYP8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92339.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_140_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7607..11701
DNA (4095bp) protein (1365aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WKK6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG90305.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_140_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11694..12524
DNA (831bp) protein (277aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobact
(protein release factor)-glutamine N5-methyltransferase (EC:2.1.1.-)
Release factor glutamine methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSM7_9GAMM
SCNpilot_expt_500_bf_scaffold_140_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12576..14468)
DNA (1893bp) protein (631aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7) rbh
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJM1_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_140_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14533..15132)
DNA (600bp) protein (200aa)
Restriction endonuclease n=1 Tax=Rhodanobacter sp. 115 RepID=I4WMQ5_9GAMM rbh
Restriction endonuclease {ECO:0000313|EMBL:EIM00747.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
restriction endonuclease rbh
SCNpilot_expt_500_bf_scaffold_140_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15383..16162
DNA (780bp) protein (260aa)
SapC protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W7L5_9GAMM rbh
SapC protein {ECO:0000313|EMBL:EIL95456.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SapC rbh
SCNpilot_expt_500_bf_scaffold_140_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16352..17764
DNA (1413bp) protein (471aa)
Outer membrane efflux protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV57_9GAMM
Outer membrane efflux protein {ECO:0000313|EMBL:EIM03349.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
outer membrane protein
SCNpilot_expt_500_bf_scaffold_140_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17761..18843
DNA (1083bp) protein (361aa)
RND family efflux transporter, MFP subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NC65_9GAMM
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGG87362.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_140_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18855..21938
DNA (3084bp) protein (1028aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC98_9GAMM rbh
Acriflavin resistance protein {ECO:0000313|EMBL:EIL97089.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acriflavin resistance protein rbh
SCNpilot_expt_500_bf_scaffold_140_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22158..22463
DNA (306bp) protein (102aa)
Propeptide PepSY amd peptidase M4 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC99_9GAMM
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:EIL97090.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Peptidase propeptide domain-containing protein
SCNpilot_expt_500_bf_scaffold_140_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22521..22994)
DNA (474bp) protein (158aa)
Acetyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W7L4_9GAMM
Acetyltransferase {ECO:0000313|EMBL:EIL95455.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetyltransferase
SCNpilot_expt_500_bf_scaffold_140_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23128..24618
DNA (1491bp) protein (497aa)
Exoribonuclease R n=1 Tax=Rhodanobacter denitrificans RepID=M4NJL6_9GAMM
exoribonuclease R
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_140_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24744..25214
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WS87_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87435.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_140_18
unknown

Not on your lists

25227..25316
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_140_19
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25380..26390)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003454ADD rbh
Membrane protein {ECO:0000313|EMBL:KJV33177.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_140_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26509..28440
DNA (1932bp) protein (644aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WMQ1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM00743.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
PGAP1-like protein rbh
SCNpilot_expt_500_bf_scaffold_140_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28600..30375)
DNA (1776bp) protein (592aa)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WN33_9GAMM rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIM00875.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acyl-CoA dehydrogenase
SCNpilot_expt_500_bf_scaffold_140_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30405..30887)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WN34_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00876.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_140_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31039..31506
DNA (468bp) protein (156aa)
SET domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WN35_9GAMM
SET domain-containing protein
SET domain-containing protein {ECO:0000313|EMBL:EIM00877.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_bf_scaffold_140_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31596..32156
DNA (561bp) protein (187aa)
Putative membrane protein/domain protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WKM0_9GAMM
putative membrane protein/domain protein
Putative membrane protein/domain protein {ECO:0000313|EMBL:AGG90291.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_140_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32156..32836
DNA (681bp) protein (227aa)
RDD domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSH3_9GAMM
RDD domain-containing protein {ECO:0000313|EMBL:EIM02415.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative membrane protein/domain protein
SCNpilot_expt_500_bf_scaffold_140_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32833..33810
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSH4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02416.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized membrane protein
SCNpilot_expt_500_bf_scaffold_140_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33800..35302
DNA (1503bp) protein (501aa)
Transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSH5_9GAMM
Transmembrane protein {ECO:0000313|EMBL:EIM02417.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_140_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35299..36396
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WJ65_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90287.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_140_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36393..37400
DNA (1008bp) protein (336aa)
ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSH7_9GAMM rbh
ATPase {ECO:0000313|EMBL:EIM02419.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
MoxR-like ATPase rbh
SCNpilot_expt_500_bf_scaffold_140_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37609..38916
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSH8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM02420.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
Displaying items 1-30 of 193 in total

View Taxonomy