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SCNpilot_expt_500_bf_scaffold_152

Search features with annotation key words

Displaying items 1-30 of 238 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_152_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..113
DNA (111bp) protein (37aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
thioredoxin-disulfide reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W136_9GAMM
SCNpilot_expt_500_bf_scaffold_152_2
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

245..898
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L0R8_FRAAD
putative protein-disulfide isomerase; K07396 putative protein-disulfide isomerase
Uncharacterized protein {ECO:0000313|EMBL:AFC85323.1}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_expt_500_bf_scaffold_152_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

918..2048
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W0M6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93017.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_152_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2045..2782
DNA (738bp) protein (246aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W727_9GAMM rbh
leucyl/phenylalanyl-tRNA--protein transferase rbh
SCNpilot_expt_500_bf_scaffold_152_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2767..3597)
DNA (831bp) protein (277aa)
Putative domain HDIG-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NER8_9GAMM rbh
putative domain HDIG-containing protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_152_6
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3753..4472)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A5211
Methyltransferase type 12 {ECO:0000313|EMBL:AIF48315.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
type 11 methyltransferase
SCNpilot_expt_500_bf_scaffold_152_7
Paenibacillus sp. FSL R7-269, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4469..4810)
DNA (342bp) protein (114aa)
alkylphosphonate utilization protein PhnA; K06193 phosphonoacetate hydrolase [EC:3.11.1.2]
Alkylphosphonate utilization operon protein PhnA n=1 Tax=Paenibacillus vortex V453 RepID=E5YPB9_9BACL
PhnA protein {ECO:0000313|EMBL:ETT54126.1}; TaxID=1226755 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-269.;"
SCNpilot_expt_500_bf_scaffold_152_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4857..6134)
DNA (1278bp) protein (426aa)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXA0_9GAMM
SCNpilot_expt_500_bf_scaffold_152_9
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6298..7194)
DNA (897bp) protein (299aa)
AraC family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W2W3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGM31842.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_152_10
Serratia liquefaciens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7282..8055
DNA (774bp) protein (258aa)
Short-chain dehydrogenase n=1 Tax=Serratia liquefaciens ATCC 27592 RepID=S5EJE2_SERLI
short-chain dehydrogenase
Short-chain dehydrogenase {ECO:0000313|EMBL:AGQ31835.1}; TaxID=1346614 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia liquefaciens ATCC 27592.;"
SCNpilot_expt_500_bf_scaffold_152_11
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8150..8410
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI0003643D4B
Uncharacterized protein {ECO:0000313|EMBL:EZH76745.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
SCNpilot_expt_500_bf_scaffold_152_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8573..9925
DNA (1353bp) protein (451aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Exodeoxyribonuclease VII large subunit (EC:3.1.11.6) rbh
Exodeoxyribonuclease 7 large subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEY6_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_152_13
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9969..10736)
DNA (768bp) protein (256aa)
Uncharacterized ACR, COG1434 family n=1 Tax=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) RepID=Q2T7E4_BURTA
hypothetical protein
Uncharacterized ACR, COG1434 family {ECO:0000313|EMBL:ABC35367.1}; Uncharacterized protein {ECO:0000313|EMBL:AIP28210.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
SCNpilot_expt_500_bf_scaffold_152_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10786..11544)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W710_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95251.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_152_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11597..12229
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUS6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX13609.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_152_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12368..13468
DNA (1101bp) protein (367aa)
Acyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUS7_9GAMM rbh
Acyltransferase {ECO:0000313|EMBL:EIL90968.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acyltransferase rbh
SCNpilot_expt_500_bf_scaffold_152_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13550..15316
DNA (1767bp) protein (589aa)
ABC transporter ATP-binding protein n=1 Tax=Dyella japonica RepID=UPI0003167AD8 rbh
ABC transporter {ECO:0000313|EMBL:AIF48336.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ABC transporter, permease/ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_152_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15411..16682)
DNA (1272bp) protein (424aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Rhodanobacter denitrificans RepID=M4NGU4_9GAMM rbh
penicillin-binding protein, beta-lactamase class C rbh
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:AGG89317.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_152_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16888..18528)
DNA (1641bp) protein (547aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3L6_9GAMM rbh
Beta-lactamase {ECO:0000313|EMBL:EIL94057.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
beta-lactamase
SCNpilot_expt_500_bf_scaffold_152_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18591..19568)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W928_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95969.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_152_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19531..20745)
DNA (1215bp) protein (405aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4W929_9GAMM rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL95970.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family rbh
SCNpilot_expt_500_bf_scaffold_152_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21039..23354)
DNA (2316bp) protein (772aa)
TonB-dependent receptor, plug n=1 Tax=Rhodanobacter sp. 115 RepID=I4W932_9GAMM rbh
TonB-dependent receptor, plug {ECO:0000313|EMBL:EIL95973.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_152_23
unknown

Not on your lists

24006..24452
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_152_24
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24471..26438)
DNA (1968bp) protein (656aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00036FCC7F rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEK57899.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
SCNpilot_expt_500_bf_scaffold_152_25
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26634..27254)
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NWU3_9RHOB
hypothetical cytosolic protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_500_bf_scaffold_152_26
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27261..29108)
DNA (1848bp) protein (616aa)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JT01_DESFR rbh
DNA methylase N-4/N-6 domain-containing protein rbh
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_500_bf_scaffold_152_27
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29557..31134)
DNA (1578bp) protein (526aa)
hypothetical protein n=7 Tax=Xanthomonas axonopodis RepID=UPI0002D9AA93
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KEP91352.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
trbL; P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_expt_500_bf_scaffold_152_28
unknown

Not on your lists

comp(31138..31392)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_152_29
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31420..32238)
DNA (819bp) protein (273aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae KPNIH18 RepID=J2TAB7_KLEPN
TrbJ {ECO:0000313|EMBL:AIT72716.1}; TaxID=28150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella senftenberg.;"
trbJ; P-type conjugative transfer protein TrbJ
SCNpilot_expt_500_bf_scaffold_152_30
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32301..33722)
DNA (1422bp) protein (474aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ACY9_NITEC rbh
relaxase/mobilization nuclease family protein rbh
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:ABI60782.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
Displaying items 1-30 of 238 in total

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