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SCNpilot_expt_500_bf_scaffold_153

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Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_153_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..296)
DNA (294bp) protein (98aa)
Putative cointegrase resolution protein n=2 Tax=Rhodanobacter RepID=I4WWN1_9GAMM
Putative cointegrase resolution protein {ECO:0000313|EMBL:EIL90322.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Plasmid replication region DNA-binding N-term
SCNpilot_expt_500_bf_scaffold_153_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

465..1628
DNA (1164bp) protein (388aa)
Phage integrase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN0_9GAMM rbh
site-specific recombinase XerD rbh
Site-specific recombinase XerD {ECO:0000313|EMBL:AGG88839.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1625..1933
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NDK5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88840.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2050..3624)
DNA (1575bp) protein (525aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEH5_9GAMM rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:AGG89169.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3718..4119)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN4_9GAMM
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG89167.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4211..5392)
DNA (1182bp) protein (394aa)
Major facilitator transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN5_9GAMM rbh
Major Facilitator Superfamily transporter rbh
Major Facilitator Superfamily transporter {ECO:0000313|EMBL:AGG89166.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5477..6727)
DNA (1251bp) protein (417aa)
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NED1_9GAMM rbh
signal transduction histidine kinase rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:AGG89165.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6711..7391)
DNA (681bp) protein (227aa)
DNA-binding response regulator ColR n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN7_9GAMM rbh
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGG89164.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7397..10531)
DNA (3135bp) protein (1045aa)
Multidrug ABC transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN8_9GAMM rbh
heavy metal efflux pump, cobalt-zinc-cadmium rbh
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG89163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10528..11580)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWN9_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89162.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11577..13040)
DNA (1464bp) protein (488aa)
Outer membrane efflux protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWP0_9GAMM rbh
outer membrane protein rbh
Outer membrane protein {ECO:0000313|EMBL:AGG89161.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13092..14810)
DNA (1719bp) protein (573aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEC7_9GAMM rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase rbh
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:AGG89160.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14807..15832)
DNA (1026bp) protein (342aa)
Glycosyl transferase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWP2_9GAMM rbh
glycosyl transferase rbh
Glycosyl transferase {ECO:0000313|EMBL:AGG89159.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16026..16583)
DNA (558bp) protein (186aa)
Co/Zn/Cd efflux system component n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR8_9GAMM
Co/Zn/Cd efflux system component
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_153_15
Paraglaciecola polaris, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16904..19897
DNA (2994bp) protein (998aa)
Transposase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWJ9_9GAMM rbh
Transposase for transposon Tn4556 {ECO:0000313|EMBL:GAC32312.1}; TaxID=1129793 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola polaris LMG 21857.;"
transposase rbh
SCNpilot_expt_500_bf_scaffold_153_16
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19989..21098)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344ECB1 rbh
Type II restriction enzyme {ECO:0000313|EMBL:KGM53140.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_153_17
unknown

Not on your lists

comp(21079..21711)
DNA (633bp) protein (211aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_153_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21715..23508
DNA (1794bp) protein (598aa)
copper oxidase n=1 Tax=Dyella ginsengisoli RepID=UPI000348EE6E rbh
Copper-resistance protein, CopA family protein {ECO:0000313|EMBL:EIL89957.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
copper-resistance protein, CopA family
SCNpilot_expt_500_bf_scaffold_153_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23505..24941
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CCD5B rbh
uncharacterized protein involved in copper resistance
Uncharacterized protein involved in copper resistance {ECO:0000313|EMBL:AGG88843.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24955..26043
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B9FBF rbh
Cytochrome c family protein {ECO:0000313|EMBL:EIL98576.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ketosteroid isomerase-like enzyme
SCNpilot_expt_500_bf_scaffold_153_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26040..26495
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003451B6A rbh
putative metal-binding protein
Putative metal-binding protein {ECO:0000313|EMBL:AGG88845.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_22
unknown

Not on your lists

26756..27196
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003472C55 rbh
SCNpilot_expt_500_bf_scaffold_153_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27272..28555
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00038293FB rbh
Putative outer membrane efflux protein {ECO:0000313|EMBL:EIM01183.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
outer membrane protein
SCNpilot_expt_500_bf_scaffold_153_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28552..30054
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034DF473 rbh
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family {ECO:0000313|EMBL:EIL94374.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
RND family efflux transporter, MFP subunit
SCNpilot_expt_500_bf_scaffold_153_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30051..32219
DNA (2169bp) protein (723aa)
cation transporter n=1 Tax=Dyella ginsengisoli RepID=UPI00034C0FD6
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA {ECO:0000313|EMBL:EIM00604.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heavy metal efflux pump, cobalt-zinc-cadmium
SCNpilot_expt_500_bf_scaffold_153_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32174..33187
DNA (1014bp) protein (338aa)
cation transporter n=1 Tax=Dyella ginsengisoli RepID=UPI00034C0FD6
heavy metal efflux pump, cobalt-zinc-cadmium
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG88851.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33184..33534
DNA (351bp) protein (117aa)
Copper binding periplasmic protein CusF n=1 Tax=Rhodanobacter denitrificans RepID=I4WWL8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88852.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_153_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33665..34006
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01187.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_bf_scaffold_153_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34141..34389)
DNA (249bp) protein (83aa)
Hg(Ii)-responsive transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ6_9GAMM
Hg(Ii)-responsive transcriptional regulator {ECO:0000313|EMBL:EIM01188.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
merR; Mercuric resistance operon regulatory protein
SCNpilot_expt_500_bf_scaffold_153_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34574..34996
DNA (423bp) protein (141aa)
Putative mercury transport protein MerC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNZ7_9GAMM
Putative mercury transport protein MerC {ECO:0000313|EMBL:EIM01189.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
merC; putative mercury transport protein MerC
Displaying items 1-30 of 130 in total

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