name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_bf_scaffold_642_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(253..1596)
|
chemotaxis protein CheY n=1 Tax=Dyella japonica RepID=UPI0002E07436
rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:AIF47008.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
|
|
SCNpilot_expt_500_bf_scaffold_642_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1683..2759)
|
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A4777
rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:AIF47009.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
alpha/beta hydrolase
|
|
SCNpilot_expt_500_bf_scaffold_642_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2822..4486)
|
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030750FE
rbh
Trehalase {ECO:0000313|EMBL:AIF47010.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
neutral trehalase
|
|
SCNpilot_expt_500_bf_scaffold_642_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4483..6750)
|
Glycoside hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAQ0_9GAMM
rbh
Glycoside hydrolase family 65 {ECO:0000313|EMBL:AHX14552.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
trehalose/maltose hydrolase or phosphorylase
|
|
SCNpilot_expt_500_bf_scaffold_642_5
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6747..8549)
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003771740
rbh
TPR domain protein {ECO:0000313|EMBL:GAD58948.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8584..9852)
|
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000376493D
rbh
MFS transporter {ECO:0000313|EMBL:AHX14550.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
fucose permease
|
|
SCNpilot_expt_500_bf_scaffold_642_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9941..12511)
|
Outer membrane receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ82_9GAMM
outer membrane receptor protein
Outer membrane receptor protein {ECO:0000313|EMBL:AGG87861.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
|
|
SCNpilot_expt_500_bf_scaffold_642_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12526..15615)
|
Beta-phosphoglucomutase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDC0_9GAMM
rbh
beta-phosphoglucomutase
rbh
Beta-phosphoglucomutase {ECO:0000313|EMBL:AGG87862.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
|
|
SCNpilot_expt_500_bf_scaffold_642_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15857..16867
|
LacI family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKL2_9GAMM
rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EIL87753.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator
|
|
SCNpilot_expt_500_bf_scaffold_642_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16877..18532)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Two-component system sensor protein pils n=1 Tax=Rhodanobacter denitrificans RepID=I4WZJ0_9GAMM
rbh
signal transduction histidine kinase
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18843..19955
|
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
succinyl-CoA synthetase (ADP-forming) beta subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9V4_9GAMM
|
|
SCNpilot_expt_500_bf_scaffold_642_12
GWA2_Deltaproteobacteria_55_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20058..20384)
|
transmembrane_regions 138..160 id=11767 bin=ACD17 species=ACD17 genus=ACD17 taxon_order=ACD17 taxon_class=ACD17 phylum=Clamydiae tax=ACD17 organism_group=Chlamydiae organism_desc=CvE6
Tax=GWA2_Deltaproteobacteria_55_10_curated
|
|
SCNpilot_expt_500_bf_scaffold_642_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20841..21746)
|
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003124787
rbh
Chromosome replication initiation inhibitor protein {ECO:0000313|EMBL:AIF47018.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
chromosome replication initiation inhibitor protein; K05596 LysR family transcriptional regulator, chromosome initiation inhibitor
|
|
SCNpilot_expt_500_bf_scaffold_642_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21849..22466
|
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000318BBEC
Amino acid transporter {ECO:0000313|EMBL:AHX14541.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
L-lysine exporter family protein; K06895 L-lysine exporter family protein LysE/ArgO
|
|
SCNpilot_expt_500_bf_scaffold_642_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22572..24263
|
NAD synthetase {ECO:0000313|EMBL:EIL96533.1}; EC=6.3.5.1 {ECO:0000313|EMBL:EIL96533.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAP2_9GAMM
rbh
NAD+ synthetase
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24345..25211)
|
Outer membrane protein assembly factor BamD n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI6_9GAMM
rbh
Beta-barrel assembly machine subunit BamD
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
|
|
SCNpilot_expt_500_bf_scaffold_642_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25307..26281
|
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAJ2_9GAMM
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26411..27166
|
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAJ3_9GAMM
rbh
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uncharacterized protein, YfiH family
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27280..29862
|
protein disaggregation chaperone n=1 Tax=Dyella japonica RepID=UPI0002F8E1F4
rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATP-dependent chaperone ClpB
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29945..32437)
|
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK2_9GAMM
rbh
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:EIL96493.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
outer membrane receptor for ferrienterochelin and colicins; K02014 iron complex outermembrane recepter protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
32724..33017
|
FmdB family regulatory protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGS9_9GAMM
FmdB family regulatory protein {ECO:0000313|EMBL:EIL98670.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative regulatory protein, FmdB family
|
|
SCNpilot_expt_500_bf_scaffold_642_22
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
33124..33669
|
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7FXD7_XANCT
Uncharacterized protein {ECO:0000313|EMBL:AJC44441.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_642_23
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33811..34152)
|
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
|
|
SCNpilot_expt_500_bf_scaffold_642_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
34479..35519
|
Aspartyl-tRNA ligase {ECO:0000313|EMBL:EIL96496.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EIL96496.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Aspartate--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK5_9GAMM
aspartyl-tRNA synthetase
|
|
SCNpilot_expt_500_bf_scaffold_642_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
35650..36309
|
Lysophospholipase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH8_9GAMM
lysophospholipase
Lysophospholipase {ECO:0000313|EMBL:AGG87877.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
|
|
SCNpilot_expt_500_bf_scaffold_642_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
36351..37064
|
Probable transcriptional regulatory protein UU5_06904 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK7_9GAMM
rbh
Probable transcriptional regulatory protein UU5_06904 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA-binding regulatory protein, YebC/PmpR family
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
37174..37731
|
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Holliday junction endonuclease RuvC (EC:3.1.22.4)
rbh
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY15_9GAMM
rbh
|
|
SCNpilot_expt_500_bf_scaffold_642_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
37728..38321
|
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Holliday junction DNA helicase RuvA n=1 Tax=Dyella ginsengisoli RepID=UPI00034834EC
rbh
Holliday junction DNA helicase subunit RuvA
|
|
SCNpilot_expt_500_bf_scaffold_642_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
38322..40259
|
potassium transporter Kup n=1 Tax=Dyella ginsengisoli RepID=UPI000345891A
rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
K+ transporter
|
|
SCNpilot_expt_500_bf_scaffold_642_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
40286..42181
|
Probable potassium transport system protein kup n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9Z0_9GAMM
rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
K+ transporter
rbh
|