ggKbase home page

SCNpilot_expt_500_bf_scaffold_642

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_642_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(253..1596)
DNA (1344bp) protein (448aa)
chemotaxis protein CheY n=1 Tax=Dyella japonica RepID=UPI0002E07436 rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:AIF47008.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
SCNpilot_expt_500_bf_scaffold_642_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1683..2759)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A4777 rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:AIF47009.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
alpha/beta hydrolase
SCNpilot_expt_500_bf_scaffold_642_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2822..4486)
DNA (1665bp) protein (555aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030750FE rbh
Trehalase {ECO:0000313|EMBL:AIF47010.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
neutral trehalase
SCNpilot_expt_500_bf_scaffold_642_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4483..6750)
DNA (2268bp) protein (756aa)
Glycoside hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAQ0_9GAMM rbh
Glycoside hydrolase family 65 {ECO:0000313|EMBL:AHX14552.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
trehalose/maltose hydrolase or phosphorylase
SCNpilot_expt_500_bf_scaffold_642_5
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6747..8549)
DNA (1803bp) protein (601aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003771740 rbh
TPR domain protein {ECO:0000313|EMBL:GAD58948.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_642_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8584..9852)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000376493D rbh
MFS transporter {ECO:0000313|EMBL:AHX14550.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
fucose permease
SCNpilot_expt_500_bf_scaffold_642_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9941..12511)
DNA (2571bp) protein (857aa)
Outer membrane receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ82_9GAMM
outer membrane receptor protein
Outer membrane receptor protein {ECO:0000313|EMBL:AGG87861.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_642_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12526..15615)
DNA (3090bp) protein (1030aa)
Beta-phosphoglucomutase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDC0_9GAMM rbh
beta-phosphoglucomutase rbh
Beta-phosphoglucomutase {ECO:0000313|EMBL:AGG87862.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_642_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15857..16867
DNA (1011bp) protein (337aa)
LacI family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKL2_9GAMM rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EIL87753.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_642_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16877..18532)
DNA (1656bp) protein (552aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Two-component system sensor protein pils n=1 Tax=Rhodanobacter denitrificans RepID=I4WZJ0_9GAMM rbh
signal transduction histidine kinase rbh
SCNpilot_expt_500_bf_scaffold_642_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18843..19955
DNA (1113bp) protein (371aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
succinyl-CoA synthetase (ADP-forming) beta subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9V4_9GAMM
SCNpilot_expt_500_bf_scaffold_642_12
GWA2_Deltaproteobacteria_55_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20058..20384)
DNA (327bp) protein (109aa)
transmembrane_regions 138..160 id=11767 bin=ACD17 species=ACD17 genus=ACD17 taxon_order=ACD17 taxon_class=ACD17 phylum=Clamydiae tax=ACD17 organism_group=Chlamydiae organism_desc=CvE6
Tax=GWA2_Deltaproteobacteria_55_10_curated
SCNpilot_expt_500_bf_scaffold_642_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20841..21746)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003124787 rbh
Chromosome replication initiation inhibitor protein {ECO:0000313|EMBL:AIF47018.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
chromosome replication initiation inhibitor protein; K05596 LysR family transcriptional regulator, chromosome initiation inhibitor
SCNpilot_expt_500_bf_scaffold_642_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21849..22466
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000318BBEC
Amino acid transporter {ECO:0000313|EMBL:AHX14541.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
L-lysine exporter family protein; K06895 L-lysine exporter family protein LysE/ArgO
SCNpilot_expt_500_bf_scaffold_642_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22572..24263
DNA (1692bp) protein (564aa)
NAD synthetase {ECO:0000313|EMBL:EIL96533.1}; EC=6.3.5.1 {ECO:0000313|EMBL:EIL96533.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAP2_9GAMM rbh
NAD+ synthetase rbh
SCNpilot_expt_500_bf_scaffold_642_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24345..25211)
DNA (867bp) protein (289aa)
Outer membrane protein assembly factor BamD n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI6_9GAMM rbh
Beta-barrel assembly machine subunit BamD
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_642_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25307..26281
DNA (975bp) protein (325aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAJ2_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_642_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26411..27166
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAJ3_9GAMM rbh
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uncharacterized protein, YfiH family rbh
SCNpilot_expt_500_bf_scaffold_642_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27280..29862
DNA (2583bp) protein (861aa)
protein disaggregation chaperone n=1 Tax=Dyella japonica RepID=UPI0002F8E1F4 rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATP-dependent chaperone ClpB rbh
SCNpilot_expt_500_bf_scaffold_642_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29945..32437)
DNA (2493bp) protein (831aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK2_9GAMM rbh
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:EIL96493.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
outer membrane receptor for ferrienterochelin and colicins; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_642_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32724..33017
DNA (294bp) protein (98aa)
FmdB family regulatory protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGS9_9GAMM
FmdB family regulatory protein {ECO:0000313|EMBL:EIL98670.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative regulatory protein, FmdB family
SCNpilot_expt_500_bf_scaffold_642_22
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33124..33669
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7FXD7_XANCT
Uncharacterized protein {ECO:0000313|EMBL:AJC44441.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_642_23
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33811..34152)
DNA (342bp) protein (114aa)
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
SCNpilot_expt_500_bf_scaffold_642_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


34479..35519
DNA (1041bp) protein (347aa)
Aspartyl-tRNA ligase {ECO:0000313|EMBL:EIL96496.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EIL96496.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Aspartate--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK5_9GAMM
aspartyl-tRNA synthetase
SCNpilot_expt_500_bf_scaffold_642_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35650..36309
DNA (660bp) protein (220aa)
Lysophospholipase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH8_9GAMM
lysophospholipase
Lysophospholipase {ECO:0000313|EMBL:AGG87877.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_642_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36351..37064
DNA (714bp) protein (238aa)
Probable transcriptional regulatory protein UU5_06904 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK7_9GAMM rbh
Probable transcriptional regulatory protein UU5_06904 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA-binding regulatory protein, YebC/PmpR family rbh
SCNpilot_expt_500_bf_scaffold_642_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37174..37731
DNA (558bp) protein (186aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Holliday junction endonuclease RuvC (EC:3.1.22.4) rbh
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY15_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_642_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37728..38321
DNA (594bp) protein (198aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Holliday junction DNA helicase RuvA n=1 Tax=Dyella ginsengisoli RepID=UPI00034834EC rbh
Holliday junction DNA helicase subunit RuvA
SCNpilot_expt_500_bf_scaffold_642_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38322..40259
DNA (1938bp) protein (646aa)
potassium transporter Kup n=1 Tax=Dyella ginsengisoli RepID=UPI000345891A rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
K+ transporter
SCNpilot_expt_500_bf_scaffold_642_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40286..42181
DNA (1896bp) protein (632aa)
Probable potassium transport system protein kup n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9Z0_9GAMM rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
K+ transporter rbh
Displaying items 1-30 of 54 in total

View Taxonomy