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SCNpilot_expt_500_bf_scaffold_123

Search features with annotation key words

Displaying items 1-30 of 186 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_123_1
unknown

Not on your lists

comp(386..535)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_123_2
unknown

Not on your lists

comp(532..1185)
DNA (654bp) protein (218aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_123_3
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2484..4058)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8I2_AZOL4 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CBS87259.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_500_bf_scaffold_123_4
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4059..5018)
DNA (960bp) protein (320aa)
CRISPR-associated protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000368CF30 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACL73518.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_500_bf_scaffold_123_5
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5008..7248)
DNA (2241bp) protein (747aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLG4_THISH rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACL73519.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_500_bf_scaffold_123_6
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7245..9734)
DNA (2490bp) protein (830aa)
Putative helicase (CRISPR associated) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z1U1_AZOL4 rbh
putative helicase (CRISPR associated); K07012 rbh
Putative helicase (CRISPR associated) {ECO:0000313|EMBL:CBS87256.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_500_bf_scaffold_123_7
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10201..10407
DNA (207bp) protein (69aa)
Transcriptional regulator, AbrB family n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLG0_THISH
AbrB family transcriptional regulator
Tax=RBG_13_Deltaproteobacteria_65_10_curated
SCNpilot_expt_500_bf_scaffold_123_8
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10404..10787
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI00037B16CC
PilT domain-containing protein
Tax=RBG_13_Deltaproteobacteria_65_10_curated
SCNpilot_expt_500_bf_scaffold_123_9
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10820..11575)
DNA (756bp) protein (252aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQM6_9BURK rbh
type 11 methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_123_10
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11605..13713)
DNA (2109bp) protein (703aa)
TonB-dependent receptor, plug n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z154_9RHOO rbh
TonB-dependent receptor, plug {ECO:0000313|EMBL:ENO88327.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
TonB-dependent receptor, plug; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_123_11
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14006..15061)
DNA (1056bp) protein (352aa)
AraC family transcriptional regulator n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y2C5_9RHOO
AraC family transcriptional regulator {ECO:0000313|EMBL:ENO88326.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_123_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15141..15437
DNA (297bp) protein (99aa)
Regulatory protein MarR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVC3_VARPE
MarR family transcriptional regulator
Regulatory protein MarR {ECO:0000313|EMBL:ADU38717.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_bf_scaffold_123_13
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15495..16487
DNA (993bp) protein (331aa)
Ferri-bacillibactin esterase BesA {ECO:0000313|EMBL:ELX08709.1}; EC=3.1.-.- {ECO:0000313|EMBL:ELX08709.1};; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
Ferri-bacillibactin esterase BesA n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PAT7_9BURK
hypothetical protein
SCNpilot_expt_500_bf_scaffold_123_14
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16499..17656
DNA (1158bp) protein (386aa)
iron ABC transporter substrate-binding protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002376F6F
Periplasmic binding family protein {ECO:0000313|EMBL:KGS03623.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
Fe3+-hydroxamate ABC transporter periplasmic component-like protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_123_15
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17653..18720
DNA (1068bp) protein (356aa)
iron-siderophore ABC transporter permease n=1 Tax=Acidovorax radicis RepID=UPI000237752E
ABC-type Fe3+-siderophore transport system, permease component {ECO:0000313|EMBL:EJE49430.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
btuC_[C]; Iron(III) dicitrate transport system permease protein FecD rbh
SCNpilot_expt_500_bf_scaffold_123_16
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18717..19580
DNA (864bp) protein (288aa)
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component n=1 Tax=Acidovorax sp. CF316 RepID=J1EAH9_9BURK rbh
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component {ECO:0000313|EMBL:EJE49431.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ABC transporter related protein
SCNpilot_expt_500_bf_scaffold_123_17
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19596..19892
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI000237752C
Uncharacterized protein {ECO:0000313|EMBL:EJE49432.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_123_18
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19984..21063)
DNA (1080bp) protein (360aa)
beta-lactamase n=1 Tax=Cupriavidus sp. WS RepID=UPI0003660856 rbh
metallo-beta-lactamase
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:CAP41449.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_500_bf_scaffold_123_19
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21060..22364)
DNA (1305bp) protein (435aa)
D-amino-acid dehydrogenase (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRP6_9BURK
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EHR72826.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
SCNpilot_expt_500_bf_scaffold_123_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22374..23018)
DNA (645bp) protein (215aa)
carbonate dehydratase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1] rbh
Carbonic anhydrase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTX4_OPITP rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_500_bf_scaffold_123_21
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23112..23603)
DNA (492bp) protein (164aa)
ArsR family transcriptional regulator n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000379E6C3
AsnC family transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
Putative transcriptional regulator, AsnC/Lrp family {ECO:0000313|EMBL:CAQ69490.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_expt_500_bf_scaffold_123_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23606..24553)
DNA (948bp) protein (316aa)
uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003785233 rbh
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_expt_500_bf_scaffold_123_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24550..25551)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TSE8_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO27308.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_123_24
Pseudomonas sp. FeS53a, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25649..26233)
DNA (585bp) protein (195aa)
Cysteine synthase {ECO:0000313|EMBL:KIV61759.1}; EC=2.5.1.47 {ECO:0000313|EMBL:KIV61759.1};; TaxID=1604022 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FeS53a.;"
hypothetical protein; K01738 cysteine synthase A [EC:2.5.1.47]
Putative cysteine synthase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HQQ1_PSEUO
SCNpilot_expt_500_bf_scaffold_123_25
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26230..26691)
DNA (462bp) protein (154aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01738 cysteine synthase A [EC:2.5.1.47]
cysteine synthase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002FF0607
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:ADV28314.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_expt_500_bf_scaffold_123_26
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26915..27814)
DNA (900bp) protein (300aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
6-phosphogluconate dehydrogenase NAD-binding n=1 Tax=Paenibacillus curdlanolyticus YK9 RepID=E0I6S0_9BACL
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_500_bf_scaffold_123_27
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27909..28484
DNA (576bp) protein (192aa)
NnrU family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TCL5_ACIDE
protein NnrU
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_500_bf_scaffold_123_28
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28663..29187
DNA (525bp) protein (175aa)
Phasin family protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RZ82_9BURK
Phasin family protein {ECO:0000313|EMBL:EFV93881.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
phasin family protein
SCNpilot_expt_500_bf_scaffold_123_29
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29270..30496
DNA (1227bp) protein (409aa)
Benzoate membrane transport protein n=1 Tax=Thauera sp. 63 RepID=N6YFT4_9RHOO rbh
major facilitator superfamily permease rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_expt_500_bf_scaffold_123_30
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30526..31038)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000370692E
Putative ADP-ribose binding module protein {ECO:0000313|EMBL:EXJ15922.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
Appr-1-p processing domain-containing protein
Displaying items 1-30 of 186 in total

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