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SCNpilot_expt_500_bf_scaffold_347

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_347_1
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

318..2411
DNA (2094bp) protein (698aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036FCE50 rbh
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:ABM94324.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_500_bf_scaffold_347_2
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2415..3095)
DNA (681bp) protein (227aa)
GDSL family lipase; K10804 acyl-CoA thioesterase I [EC:3.1.2.- 3.1.1.5]
Acyl-CoA thioesterase I n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQ31_9BURK
GDSL-like protein {ECO:0000313|EMBL:KCB35566.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
SCNpilot_expt_500_bf_scaffold_347_3
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3112..3801
DNA (690bp) protein (230aa)
ABC transporter, ATP-binding protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RVJ4_9BURK rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFV95798.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
ABC transporter ATP-binding protein
SCNpilot_expt_500_bf_scaffold_347_4
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3767..5410)
DNA (1644bp) protein (548aa)
glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] rbh
Glucose-6-phosphate isomerase n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DHG1_9BURK
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_500_bf_scaffold_347_5
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5454..7073)
DNA (1620bp) protein (540aa)
carbohydrate kinase n=1 Tax=Burkholderia sp. JPY251 RepID=UPI0003641072
Carbohydrate kinase {ECO:0000313|EMBL:KHD18381.1}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
carbohydrate kinase
SCNpilot_expt_500_bf_scaffold_347_6
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7200..11246
DNA (4047bp) protein (1349aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp
purL; phosphoribosylformyl-glycineamide synthetase (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase n=1 Tax=Ralstonia sp. PBA RepID=I9BVC3_9RALS
SCNpilot_expt_500_bf_scaffold_347_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11268..12887
DNA (1620bp) protein (540aa)
heme ABC transporter ATP-binding protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003600896
Probable ATP-binding ABC transporter protein {ECO:0000313|EMBL:CDM24206.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ABC transporter ATP-binding protein
SCNpilot_expt_500_bf_scaffold_347_8
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12908..14833)
DNA (1926bp) protein (642aa)
mnmC; 5-methylaminomethyl-2-thiouridine methyltransferase; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000255|HAMAP-Rule:MF_01102}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; tRNA (mnm(5)s(2)U34)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=2.1.1.61 {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; FAD-dependent cmnm(5)s(2)U34 oxidoreductase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=1.5.-.- {ECO:0000255|HAMAP-Rule:MF_01102};; TaxID=264198 species="Bacteria; Prot
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=MNMC_CUPPJ
SCNpilot_expt_500_bf_scaffold_347_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14899..15246
DNA (348bp) protein (116aa)
Putative uncharacterized protein n=2 Tax=Variovorax paradoxus RepID=C5CTN3_VARPS
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_bf_scaffold_347_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15243..16874
DNA (1632bp) protein (544aa)
Folate transporter 3 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKB8_9PROT
Folate transporter 3 {ECO:0000313|EMBL:CCU63232.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_347_11
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16936..18144
DNA (1209bp) protein (403aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSQ5_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24617.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_347_12
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18243..19205)
DNA (963bp) protein (321aa)
pyridoxal-phosphate dependent enzyme family protein 3; K01754 threonine dehydratase [EC:4.3.1.19] rbh
Pyridoxal-phosphate dependent enzyme family protein 3 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HIQ0_ACHXA rbh
Pyridoxal-phosphate dependent enzyme family protein 3 {ECO:0000313|EMBL:ADP14335.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_500_bf_scaffold_347_13
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19311..19745
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46T69_CUPPJ
Transporter {ECO:0000313|EMBL:KDP88117.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein; K08978 putative membrane protein
SCNpilot_expt_500_bf_scaffold_347_14
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19742..20368
DNA (627bp) protein (209aa)
Threonine transporter RhtB n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GAG2_9BURK
Threonine transporter RhtB {ECO:0000313|EMBL:ESH87897.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
lysine exporter protein LysE/YggA
SCNpilot_expt_500_bf_scaffold_347_15
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20376..21614
DNA (1239bp) protein (413aa)
Putative exported protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MEH4_BORPB
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:CCJ48130.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
SCNpilot_expt_500_bf_scaffold_347_16
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21649..22050)
DNA (402bp) protein (134aa)
HIT family hydrolase, diadenosine tetraphosphate hydrolase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QLD4_AZOSU
HIT family hydrolase, diadenosine tetraphosphate hydrolase; K02503 Hit-like protein involved in cell-cycle regulation
HIT family hydrolase, diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:AEV24463.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_500_bf_scaffold_347_17
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22156..23391
DNA (1236bp) protein (412aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:CAL95716.1}; EC=1.1.1.95 {ECO:0000313|EMBL:CAL95716.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
D-3-phosphoglycerate dehydrogenase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KA60_AZOSB rbh
SCNpilot_expt_500_bf_scaffold_347_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23414..24616
DNA (1203bp) protein (401aa)
NnrS n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122D6_POLSJ rbh
NnrS; K07234 uncharacterized protein involved in response to NO rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_500_bf_scaffold_347_19
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

24669..25658
DNA (990bp) protein (330aa)
hypothetical protein; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase (URO-D) n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THU7_9CHLR
Tax=RBG_16_Chloroflexi_64_32_curated
SCNpilot_expt_500_bf_scaffold_347_20
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25669..26928)
DNA (1260bp) protein (420aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
dadA1; D-amino acid dehydrogenase small subunit (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase small subunit n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RV73_9BURK
SCNpilot_expt_500_bf_scaffold_347_21
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26941..27900)
DNA (960bp) protein (320aa)
ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2ENP8_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ELA01153.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
putative Bug-like extracytoplasmic solute binding receptor, TTT family
SCNpilot_expt_500_bf_scaffold_347_22
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27960..28742)
DNA (783bp) protein (261aa)
3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.100)
Short chain dehydrogenase family protein 13 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F3F2_9BURK
Short chain dehydrogenase family protein 13 {ECO:0000313|EMBL:EHK67206.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
SCNpilot_expt_500_bf_scaffold_347_23
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28969..29997
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X5B9_OXAFO rbh
Aldo/keto reductase {ECO:0000313|EMBL:KJS33654.1}; TaxID=1629708 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
aldo/keto reductase
SCNpilot_expt_500_bf_scaffold_347_24
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30080..30334
DNA (255bp) protein (85aa)
plasmid stabilization protein n=1 Tax=Xanthomonas RepID=UPI0001CC0210
Plasmid stabilization protein {ECO:0000313|EMBL:KFA06735.1}; TaxID=1094183 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. musacearum NCPPB 2005.;"
plasmid stability protein, putative
SCNpilot_expt_500_bf_scaffold_347_25
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30335..30754
DNA (420bp) protein (140aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1094180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola pv. vasculorum NCPPB 1381.;"
plasmid stabilization protein n=2 Tax=Xanthomonas RepID=UPI0001CC0211
plasmid stability protein, putative; K07062
SCNpilot_expt_500_bf_scaffold_347_26
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30912..31193
DNA (282bp) protein (94aa)
ABC transporter related n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RST7_ACCPU
RTX-I toxin determinant B {ECO:0000313|EMBL:KFB70382.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
ABC transporter
SCNpilot_expt_500_bf_scaffold_347_27
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31364..32944
DNA (1581bp) protein (527aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q5L4_ACIAP rbh
methyl-accepting chemotaxis sensory transducer rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ADX45642.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_347_28
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32997..33329
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G992_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL63079.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_expt_500_bf_scaffold_347_29
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33326..34744
DNA (1419bp) protein (473aa)
aspA2; aspartate ammonia-lyase (EC:4.3.1.1); K01744 aspartate ammonia-lyase [EC:4.3.1.1]
Aspartate ammonia-lyase {ECO:0000256|RuleBase:RU362017}; Short=Aspartase {ECO:0000256|RuleBase:RU362017};; EC=4.3.1.1 {ECO:0000256|RuleBase:RU362017};; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
Aspartate ammonia-lyase AspA n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EXU2_CUPNN
SCNpilot_expt_500_bf_scaffold_347_30
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34780..35226)
DNA (447bp) protein (149aa)
OsmC family protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y5V5_LEPCP
OsmC family protein
OsmC family protein {ECO:0000313|EMBL:ACB36001.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Displaying items 1-30 of 50 in total

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