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SCNpilot_expt_500_bf_scaffold_406

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_406_1
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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3..191
DNA (189bp) protein (63aa)
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_500_bf_scaffold_406_2
Congregibacter litoralis, Congregibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

228..1892
DNA (1665bp) protein (555aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE20 RepID=UPI0003732A99
Conjugative coupling factor TraD, TOL family {ECO:0000313|EMBL:EAQ99589.2}; TaxID=314285 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Congregibacter.;" source="Congregibacter litoralis KT71.;"
Type IV secretory pathway, VirD4 components
SCNpilot_expt_500_bf_scaffold_406_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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1882..2595
DNA (714bp) protein (238aa)
hypothetical protein id=12497087 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_500_bf_scaffold_406_4
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2634..3824)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4KBI0_THASP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACR01756.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
SCNpilot_expt_500_bf_scaffold_406_5
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3967..5046
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XMM4_VARPD rbh
Uncharacterized protein {ECO:0000313|EMBL:EXI66451.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_406_6
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5046..5942
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WWZ4_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EXI66450.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_406_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5959..8589
DNA (2631bp) protein (877aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida (strain GB-1) RepID=B0KGK8_PSEPG rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_expt_500_bf_scaffold_406_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8593..11739
DNA (3147bp) protein (1049aa)
UvrD/REP helicase n=1 Tax=Pseudomonas putida (strain GB-1) RepID=B0KGK9_PSEPG rbh
UvrD/REP helicase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_expt_500_bf_scaffold_406_9
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11687..13042
DNA (1356bp) protein (452aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHH2_ANADF rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS28168.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
SCNpilot_expt_500_bf_scaffold_406_10
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13039..14829
DNA (1791bp) protein (597aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHH3_ANADF rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS28169.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
SCNpilot_expt_500_bf_scaffold_406_11
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14822..18250
DNA (3429bp) protein (1143aa)
Helicase domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHH4_ANADF rbh
Helicase domain protein {ECO:0000313|EMBL:ABS28170.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
helicase domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_406_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18265..20583
DNA (2319bp) protein (773aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3X7_VARPE
Uncharacterized protein {ECO:0000313|EMBL:KJA08791.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_406_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20584..23553
DNA (2970bp) protein (990aa)
Putative type III restriction enzyme, res subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1X681_VARPD rbh
Putative type III restriction enzyme, res subunit {ECO:0000313|EMBL:AGU47849.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
putative type III restriction enzyme, res subunit rbh
SCNpilot_expt_500_bf_scaffold_406_14
Legionella norrlandica, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24073..24282
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Legionella shakespearei RepID=UPI000374005D
Transcriptional regulator {ECO:0000313|EMBL:KGP62325.1}; TaxID=1498499 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella norrlandica.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_406_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24364..27075
DNA (2712bp) protein (904aa)
CRISPR-associated helicase Cas3 family protein n=1 Tax=Pseudomonas stutzeri TS44 PF9_PSEST">RepID=I4JPF9_PSEST rbh
CRISPR-associated helicase Cas3 family protein {ECO:0000313|EMBL:EIK54349.1}; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri TS44.;"
CRISPR-associated helicase Cas3 family protein; K07012 rbh
SCNpilot_expt_500_bf_scaffold_406_16
unknown

Not on your lists

27045..27161
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_406_17
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27396..28973
DNA (1578bp) protein (526aa)
CRISPR-associated Cse1 family protein n=1 Tax=Pseudomonas stutzeri TS44 PF8_PSEST">RepID=I4JPF8_PSEST rbh
CRISPR-associated Cse1 family protein {ECO:0000313|EMBL:EIK54348.1}; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri TS44.;"
CRISPR-associated Cse1 family protein rbh
SCNpilot_expt_500_bf_scaffold_406_18
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28975..29547
DNA (573bp) protein (191aa)
CRISPR-associated protein Cse2 n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CACA3
CRISPR-associated Cse2 family protein {ECO:0000313|EMBL:EIK54347.1}; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri TS44.;"
CRISPR-associated Cse2 family protein
SCNpilot_expt_500_bf_scaffold_406_19
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29568..30713
DNA (1146bp) protein (382aa)
CRISPR-associated Cse4 family protein n=1 Tax=Pseudomonas stutzeri TS44 PF6_PSEST">RepID=I4JPF6_PSEST rbh
CRISPR-associated Cse4 family protein {ECO:0000313|EMBL:EIK54346.1}; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri TS44.;"
CRISPR-associated protein, CT1975 rbh
SCNpilot_expt_500_bf_scaffold_406_20
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30717..31346
DNA (630bp) protein (210aa)
CRISPR-associated protein Cas5 n=1 Tax=Ideonella sp. B508-1 RepID=UPI000349AF56 rbh
CRISPR-associated Cas5e family protein {ECO:0000313|EMBL:EXF44083.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
CRISPR-associated Cas5e family protein rbh
Displaying 20 items

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