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SCNpilot_expt_500_bf_scaffold_428

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_428_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(291..839)
DNA (549bp) protein (183aa)
N-acetylmuramoyl-L-alanine amidase, family 2 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKP8_THIDA
N-acetyl-anhydromuranmyl-L-alanine amidase; K03806 AmpD protein
N-acetylmuramoyl-L-alanine amidase, family 2 {ECO:0000313|EMBL:AAZ96729.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_428_2
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(921..2531)
DNA (1611bp) protein (537aa)
Sigma-54 interaction domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYF2_9BURK rbh
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EFV94556.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
pilR; two-components system response regulator; K02667 two-component system, NtrC family, response regulator PilR rbh
SCNpilot_expt_500_bf_scaffold_428_3
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2528..4213)
DNA (1686bp) protein (562aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYF3_9BURK rbh
SCNpilot_expt_500_bf_scaffold_428_4
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4210..4488)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A5K1_ALKEH
Uncharacterized protein {ECO:0000313|EMBL:KGD90464.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
hypothetical protein; K06950 uncharacterized protein
SCNpilot_expt_500_bf_scaffold_428_5
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4488..5291)
DNA (804bp) protein (268aa)
ABC transporter permease n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G245_9BURK
hypothetical protein
Tax=RBG_16_Gallionellales_56_9_curated
SCNpilot_expt_500_bf_scaffold_428_6
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5308..6669
DNA (1362bp) protein (454aa)
Signal recognition particle protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=I6AFY2_BURTH rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
ffh; signal recognition particle protein rbh
SCNpilot_expt_500_bf_scaffold_428_7
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6666..8108
DNA (1443bp) protein (481aa)
D-lactate dehydrogenase (EC:1.1.2.4) rbh
D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:ADX46914.1}; EC=1.1.2.4 {ECO:0000313|EMBL:ADX46914.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
D-lactate dehydrogenase (Cytochrome) n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q5V2_ACIAP rbh
SCNpilot_expt_500_bf_scaffold_428_8
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8180..8755)
DNA (576bp) protein (192aa)
Exported protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H1E9_9PROT
Exported protein {ECO:0000313|EMBL:EKV30894.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
twin-arginine translocation pathway signal
SCNpilot_expt_500_bf_scaffold_428_9

Not on your lists

comp(8752..9765)
DNA (1014bp) protein (338aa)
Putative ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=mine drainage metagenome RepID=E6PT60_9ZZZZ
Putative ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:CBH98117.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_expt_500_bf_scaffold_428_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9762..10466)
DNA (705bp) protein (235aa)
Branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Rhodovulum sp. PH10 RepID=J6UAW7_9RHOB
Branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:EJW10231.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative branched-chain amino acid ABC transporter, ATP-binding component (livF-like); K01996 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_428_11
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10476..11195)
DNA (720bp) protein (240aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W4G3_MAGSA
ABC-type branched-chain amino acid transport systems, ATPase component; K01995 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_500_bf_scaffold_428_12
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11209..12195)
DNA (987bp) protein (329aa)
Putative branched-chain amino acid ABC transporter, permease component (LivM-like) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZAN6_AZOL4 rbh
putative branched-chain amino acid ABC transporter, permease component (livM-like); K01998 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_expt_500_bf_scaffold_428_13
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12192..13058)
DNA (867bp) protein (289aa)
High-affinity branched-chain amino acid transport system permease protein LivH n=1 Tax=Rhodovulum sp. PH10 RepID=J6LA07_9RHOB
livH; branched-chain amino acid transport system permease protein; K01997 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_500_bf_scaffold_428_14
unknown

Not on your lists

comp(13249..13914)
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_428_15
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14282..15529)
DNA (1248bp) protein (416aa)
Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ARP0_AZOBR rbh
livK; branched-chain amino acid transport system substrate-binding protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_500_bf_scaffold_428_16
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15619..17115)
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034BAFA7 rbh
AMP-dependent synthetase and ligase rbh
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_500_bf_scaffold_428_17
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17153..17665
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000370CE03
MarR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_500_bf_scaffold_428_18
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17711..18361)
DNA (651bp) protein (217aa)
Transglycosylase SLT domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYG6_9BURK
Lytic transglycosylase subunit {ECO:0000313|EMBL:BAO28167.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
signal peptide protein
SCNpilot_expt_500_bf_scaffold_428_19
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18387..20156)
DNA (1770bp) protein (590aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYG7_9BURK rbh
SCNpilot_expt_500_bf_scaffold_428_20
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20268..20861
DNA (594bp) protein (198aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
RNA pyrophosphohydrolase n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RF12_9RHOO
nudH; Nudix hydrolase
SCNpilot_expt_500_bf_scaffold_428_21
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20887..22752)
DNA (1866bp) protein (622aa)
Multidrug ABC transporter ATPase/permease n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EE95_9BURK rbh
Multidrug ABC transporter ATPase/permease {ECO:0000313|EMBL:EOA03800.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
multidrug ABC transporter ATPase/permease; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_bf_scaffold_428_22
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22749..24152)
DNA (1404bp) protein (468aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1388764 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans EGD-HP2.;"
fumC; fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2] rbh
fumarate hydratase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00031982BC rbh
SCNpilot_expt_500_bf_scaffold_428_23
unknown

Not on your lists

24390..24605
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_428_24
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24706..25938)
DNA (1233bp) protein (411aa)
proB; gamma-glutamyl kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] rbh
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1249472 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR2543.;"
Glutamate 5-kinase n=33 Tax=pseudomallei group RepID=PROB_BURM7 rbh
SCNpilot_expt_500_bf_scaffold_428_25
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25931..27043)
DNA (1113bp) protein (371aa)
GTPase CgtA n=1 Tax=Caldimonas manganoxidans RepID=UPI00035DE1D2
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
cgtA; Obg family GTPase CgtA rbh
SCNpilot_expt_500_bf_scaffold_428_26
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27144..27404)
DNA (261bp) protein (87aa)
50S ribosomal protein L27 n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WNW5_9BURK
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
SCNpilot_expt_500_bf_scaffold_428_27
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27427..27822)
DNA (396bp) protein (132aa)
50S ribosomal protein L21 n=8 Tax=Ralstonia RepID=B5SIE7_RALSL
rplU; 50s ribosomal subunit protein l21; K02888 large subunit ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1091042 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum K60-1.;"
SCNpilot_expt_500_bf_scaffold_428_28
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27954..28937
DNA (984bp) protein (328aa)
Octaprenyl diphosphate synthase (EC:2.5.1.90)
Octaprenyl diphosphate synthase {ECO:0000313|EMBL:AGH85262.1}; EC=2.5.1.90 {ECO:0000313|EMBL:AGH85262.1};; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
Octaprenyl diphosphate synthase n=3 Tax=Ralstonia solanacearum RepID=M4UJ98_RALSL
SCNpilot_expt_500_bf_scaffold_428_29
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29334..29714
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GP95_THISH
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
Displaying 29 items

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