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SCNpilot_expt_500_bf_scaffold_554

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_554_1
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

215..805
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HML4_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL94251.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_500_bf_scaffold_554_2
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(833..1888)
DNA (1056bp) protein (352aa)
Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NU60_CHRVO rbh
hypothetical protein; K07001 NTE family protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:AAQ60511.1}; TaxID=243365 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /; NBRC 12614 / NCIMB 9131 / NCTC 9757).;"
SCNpilot_expt_500_bf_scaffold_554_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2020..3327)
DNA (1308bp) protein (436aa)
C4-dicarboxylate TRAP-T family tripartite ATP-independent periplasmic transporter, membrane protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKG2_9BURK rbh
C4-dicarboxylate TRAP-T family tripartite ATP-independent periplasmic transporter, membrane protein {ECO:0000313|EMBL:EIK89702.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
TRAP dicarboxylate transporter subunit DctM
SCNpilot_expt_500_bf_scaffold_554_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3327..3785)
DNA (459bp) protein (153aa)
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKG1_9BURK
TRAP-type C4-dicarboxylate transporter small permease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
SCNpilot_expt_500_bf_scaffold_554_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3828..4817)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKG0_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK89700.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
extracellular solute-binding protein, family 7 family protein 4
SCNpilot_expt_500_bf_scaffold_554_6
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4839..5609)
DNA (771bp) protein (257aa)
Short-chain dehydrogenase reductase sdr n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKF9_9BURK
short-chain dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_500_bf_scaffold_554_7
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5625..6599)
DNA (975bp) protein (325aa)
pyruvate dehydrogenase (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030E1922 rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_500_bf_scaffold_554_8
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6601..7554)
DNA (954bp) protein (318aa)
pyruvate dehydrogenase (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030221E4
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_500_bf_scaffold_554_9
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7567..7806)
DNA (240bp) protein (80aa)
dihydrolipoamide succinyltransferase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037EFF80
sucB_odhB; 2-oxoglutarate dehydrogenase E2 component
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_500_bf_scaffold_554_10
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7823..8572)
DNA (750bp) protein (250aa)
catalytic domain of components of various dehydrogenase complexes; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000364764C
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_500_bf_scaffold_554_11
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8644..9195
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000382E54C
transcriptional regulator, MarR family
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_500_bf_scaffold_554_12
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9128..10054)
DNA (927bp) protein (309aa)
Cys regulon transcriptional activator CysB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK41_9PROT
transcriptional regulator CysB-like protein; K13634 LysR family transcriptional regulator, cys regulon transcriptional activator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_500_bf_scaffold_554_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10242..10559
DNA (318bp) protein (106aa)
id=3780581 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_500_bf_scaffold_554_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10578..11147
DNA (570bp) protein (190aa)
Oxidoreductase n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HQT1_PSEST
nitroreductase family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_500_bf_scaffold_554_15
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11275..12249
DNA (975bp) protein (325aa)
Uncharacterized protein upf0065 n=2 Tax=Bordetella bronchiseptica RepID=K4T889_BORBO rbh
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:KDD64722.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
protein bugT-like
SCNpilot_expt_500_bf_scaffold_554_16
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12411..13565
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLF4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR23142.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
SCNpilot_expt_500_bf_scaffold_554_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13711..14514)
DNA (804bp) protein (268aa)
Putative IclR-family regulatory protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NWG6_AROAE
iclR; IclR family regulatory protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_500_bf_scaffold_554_18
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14685..16088
DNA (1404bp) protein (468aa)
Glucose-inhibited division protein A id=3931052 bin=GWC2_Syntrophus__56_31 species=Nitratireductor pacificus genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good + rbh
glucose-inhibited division protein A rbh
Tax=GWC2_Syntrophus_56_31_curated
SCNpilot_expt_500_bf_scaffold_554_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16151..17137
DNA (987bp) protein (329aa)
MFS transporter n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI0003710287
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_554_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17214..18158)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000380452C
putative transporter, EamA family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_500_bf_scaffold_554_21
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18155..18367)
DNA (213bp) protein (71aa)
Uncharacterized protein id=1269118 bin=GWE1_Burkholderiales_65_30 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_500_bf_scaffold_554_22
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18364..19116)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000374F2BA
integral membrane protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_554_23
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19171..19779)
DNA (609bp) protein (203aa)
RNA polymerase sigma factor RpoD n=18 Tax=Bordetella pertussis RepID=F4LDX9_BORPC
rpoD; RNA polymerase sigma factor 70
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=743278 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis B1920.;"
SCNpilot_expt_500_bf_scaffold_554_24
Sporothrix schenckii, Sporothrix, Ophiostomatales, Sordariomycetidae, Ascomycota, Fungi

Not on your lists

20283..20801
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183) RepID=U7PQ26_SPOS1
Uncharacterized protein {ECO:0000313|EMBL:ERS97026.1}; TaxID=1391915 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; mitosporic Ophiostomataceae; Sporothrix.;" source="Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183); (Rose-picker's disease fungus).;"
SCNpilot_expt_500_bf_scaffold_554_25
Boreogadus saida, Boreogadus, Gadiformes, Neopterygii, Chordata, Metazoa

Not on your lists

21180..21746
DNA (567bp) protein (189aa)
Antifreeze glycoprotein n=1 Tax=Boreogadus saida RepID=A4K455_BORSA
Antifreeze glycopeptide AFGP polyprotein {ECO:0000313|EMBL:AAC60129.1}; Flags: Precursor;; TaxID=44932 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Boreogadus.;" source="Boreogadus saida (Polar cod).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_554_26
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21885..23705)
DNA (1821bp) protein (607aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
dnaG; DNA primase (EC:2.7.7.-); K02316 DNA primase [EC:2.7.7.-] rbh
DNA primase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AIS5_COLFT rbh
SCNpilot_expt_500_bf_scaffold_554_27
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23708..24157)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WEU0_BURSC
hypothetical protein; K09117 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG19215.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_expt_500_bf_scaffold_554_28
Sutterella wadsworthensis, Sutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24261..24473)
DNA (213bp) protein (71aa)
30S ribosomal protein S21 n=5 Tax=Sutterella RepID=E7H432_9BURK
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=742821 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella.;" source="Sutterella wadsworthensis 3_1_45B.;"
SSU ribosomal protein S21P; K02970 small subunit ribosomal protein S21
SCNpilot_expt_500_bf_scaffold_554_29
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24668..25684
DNA (1017bp) protein (339aa)
ATPase AAA; K01338 ATP-dependent Lon protease [EC:3.4.21.53] rbh
AAA ATPase central domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WMD9_9BURK rbh
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_500_bf_scaffold_554_30
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25818..27014
DNA (1197bp) protein (399aa)
Diguanylate cyclase n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WGH7_BURSC
diguanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
Displaying items 1-30 of 58 in total

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