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SCNpilot_expt_500_bf_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 272 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_52_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..206
DNA (204bp) protein (68aa)
Capsular polysaccharide biosynthesis protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMD6_9PROT
UDP-phosphate glucose phosphotransferase {ECO:0000313|EMBL:KIO47865.1}; Flags: Fragment;; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
sugar transferase; K03606 putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase
SCNpilot_expt_500_bf_scaffold_52_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

503..1786
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLS9_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63922.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_52_3
unknown

Not on your lists

1881..3374
DNA (1494bp) protein (498aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_52_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3753..4745
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXE4_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63920.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_52_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4788..5597
DNA (810bp) protein (270aa)
Capsule polysaccharide export protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLN2_9PROT rbh
Capsule polysaccharide export protein {ECO:0000313|EMBL:CCU63919.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
polysaccharide export protein; K01991 polysaccharide export outer membrane protein rbh
SCNpilot_expt_500_bf_scaffold_52_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5611..7032
DNA (1422bp) protein (474aa)
Tyrosine-protein kinase Wzc {ECO:0000313|EMBL:CCU63918.1}; EC=2.7.10.2 {ECO:0000313|EMBL:CCU63918.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Tyrosine-protein kinase Wzc n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMD2_9PROT rbh
lipopolysaccharide biosynthesis protein rbh
SCNpilot_expt_500_bf_scaffold_52_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7049..7993
DNA (945bp) protein (315aa)
Tyrosine-protein kinase Wzc {ECO:0000313|EMBL:CCU63917.1}; EC=2.7.10.2 {ECO:0000313|EMBL:CCU63917.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
protein-tyrosine kinase; K00903 protein-tyrosine kinase [EC:2.7.10.-] rbh
Tyrosine-protein kinase Wzc n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLS3_9PROT rbh
SCNpilot_expt_500_bf_scaffold_52_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8540..9445
DNA (906bp) protein (302aa)
Eight transmembrane protein EpsH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKB3_9PROT rbh
Eight transmembrane protein EpsH {ECO:0000313|EMBL:CCU63916.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_52_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9460..10146
DNA (687bp) protein (229aa)
EpsI protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXD9_9PROT rbh
EpsI protein {ECO:0000313|EMBL:CCU63915.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_52_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10151..11236
DNA (1086bp) protein (362aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
GDP-mannose 4,6-dehydratase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLM8_9PROT rbh
gmd; GDP-mannose 4,6-dehydratase rbh
SCNpilot_expt_500_bf_scaffold_52_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11341..12066
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXD6_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63910.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
FkbM family methyltransferase
SCNpilot_expt_500_bf_scaffold_52_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12220..13296
DNA (1077bp) protein (359aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
GDP-L-fucose synthetase (EC:1.1.1.271); K02377 GDP-L-fucose synthase [EC:1.1.1.271] rbh
GDP-L-fucose synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMC8_9PROT rbh
SCNpilot_expt_500_bf_scaffold_52_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13259..14854
DNA (1596bp) protein (532aa)
Membrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLR8_9PROT rbh
Membrane protein {ECO:0000313|EMBL:CCU63912.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
membrane protein
SCNpilot_expt_500_bf_scaffold_52_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14851..16077
DNA (1227bp) protein (409aa)
Glycosyltransferase-like protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKA9_9PROT rbh
Glycosyltransferase-like protein {ECO:0000313|EMBL:CCU63911.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
glycosyltransferase-like protein
SCNpilot_expt_500_bf_scaffold_52_15
unknown

Not on your lists

16189..17625
DNA (1437bp) protein (479aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_52_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17613..18479
DNA (867bp) protein (289aa)
Putative glucosyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMC5_9PROT
Putative glucosyltransferase {ECO:0000313|EMBL:CCU63908.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative glycosyltransferase
SCNpilot_expt_500_bf_scaffold_52_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18476..19852
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLR5_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63907.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
beta-1,4-xylanase
SCNpilot_expt_500_bf_scaffold_52_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19922..20902
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCF8_NITMU rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO49446.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K09726 hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_52_19
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20922..22025
DNA (1104bp) protein (368aa)
Oxidoreductase-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCF7_NITMU rbh
oxidoreductase-like protein rbh
Oxidoreductase-like protein {ECO:0000313|EMBL:ABB73564.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_bf_scaffold_52_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22057..22947
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCF6_NITMU rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO49444.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_52_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23605..24570
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKA4_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU63906.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_52_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24567..25679
DNA (1113bp) protein (371aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14] rbh
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCF4_NITMU rbh
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:KIO49442.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_bf_scaffold_52_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25853..26929
DNA (1077bp) protein (359aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] rbh
UDP-glucose 4-epimerase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMC2_9PROT rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KIO49441.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_bf_scaffold_52_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26997..28469
DNA (1473bp) protein (491aa)
Mannose-1-phosphate guanylyltransferase (GDP) {ECO:0000313|EMBL:CCU63902.1}; EC=2.7.7.22 {ECO:0000313|EMBL:CCU63902.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (EC:2.7.7.22); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] rbh
Mannose-1-phosphate guanylyltransferase (GDP) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLR1_9PROT rbh
SCNpilot_expt_500_bf_scaffold_52_25
unknown

Not on your lists

comp(28392..28817)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_52_26
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29154..29723
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCF1_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73570.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_bf_scaffold_52_27
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29734..30318)
DNA (585bp) protein (195aa)
hypothetical protein id=12496888 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_52_28
unknown

Not on your lists

comp(30543..30719)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_52_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31614..32372
DNA (759bp) protein (253aa)
pseudouridine synthase Rsu; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] rbh
tRNA pseudouridine synthase A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLL8_9PROT rbh
Pseudouridylate synthase {ECO:0000313|EMBL:KIO49482.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_bf_scaffold_52_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32637..33701
DNA (1065bp) protein (355aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IVU6_9GAMM
rmlB; dTDP-glucose 4,6-dehydratase
Displaying items 1-30 of 272 in total

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