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SCNpilot_expt_500_bf_scaffold_1380

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1380_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..714
DNA (714bp) protein (238aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=12498463 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1380_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

714..932
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=12498464 bin=THIO_MID species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1380_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1185..1541
DNA (357bp) protein (119aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=12498465 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1380_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1551..1949
DNA (399bp) protein (133aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 id=12498466 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1380_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1985..2614
DNA (630bp) protein (210aa)
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=12498467 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2648..3577
DNA (930bp) protein (310aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] id=12498468 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3652..4041
DNA (390bp) protein (130aa)
50S ribosomal protein L17P; K02879 large subunit ribosomal protein L17 id=12498469 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
50S ribosomal protein L17P; K02879 large subunit ribosomal protein L17
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1380_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4152..4880
DNA (729bp) protein (243aa)
hypothetical protein; K09134 hypothetical protein id=12498470 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein; K09134 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4877..5671)
DNA (795bp) protein (265aa)
hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81] id=12498471 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6077..6388)
DNA (312bp) protein (104aa)
lipoprotein id=12498472 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6512..7246)
DNA (735bp) protein (245aa)
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.-); K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] id=12498473 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.-); K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7248..8813)
DNA (1566bp) protein (522aa)
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A id=12498474 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1380_13
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9154..10080
DNA (927bp) protein (309aa)
Multidrug transport protein, mfs family n=2 Tax=Ralstonia solanacearum RepID=F6G476_RALS8
multidrug transport protein, mfs family
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_expt_500_bf_scaffold_1380_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10112..11494
DNA (1383bp) protein (461aa)
major facilitator transporter id=12498475 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
major facilitator transporter rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_1380_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11530..12006
DNA (477bp) protein (159aa)
single-strand binding protein; K03111 single-strand DNA-binding protein id=12498476 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
single-strand binding protein; K03111 single-strand DNA-binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1380_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12116..14107
DNA (1992bp) protein (664aa)
hypothetical protein; K02014 iron complex outermembrane recepter protein id=12498477 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein; K02014 iron complex outermembrane recepter protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1380_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14182..14442
DNA (261bp) protein (87aa)
hypothetical protein id=12498478 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1380_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14509..15117
DNA (609bp) protein (203aa)
transmembrane protein id=12498479 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_1380_19

Not on your lists


15125..16921
DNA (1797bp) protein (599aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] id=12498480 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria rbh
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EFK95333.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EFK95333.1};; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
SCNpilot_expt_500_bf_scaffold_1380_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16923..17228
DNA (306bp) protein (102aa)
hypothetical protein id=12498481 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17225..17677
DNA (453bp) protein (151aa)
ntpA; dATP pyrophosphohydrolase; K08310 dATP pyrophosphohydrolase [EC:3.6.1.-] id=12498482 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
ntpA; dATP pyrophosphohydrolase; K08310 dATP pyrophosphohydrolase [EC:3.6.1.-]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17737..18489
DNA (753bp) protein (251aa)
endonuclease / exonuclease / phosphatase family protein; K06896 id=12498483 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
endonuclease / exonuclease / phosphatase family protein; K06896
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1380_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18486..19673
DNA (1188bp) protein (396aa)
phospholipase D/transphosphatidylase; K06132 putative cardiolipin synthase [EC:2.7.8.-] id=12498484 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
phospholipase D/transphosphatidylase; K06132 putative cardiolipin synthase [EC:2.7.8.-]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19735..20595)
DNA (861bp) protein (287aa)
putative neutral zinc metallopeptidase; K07054 id=12498485 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
putative neutral zinc metallopeptidase; K07054
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20888..21898
DNA (1011bp) protein (337aa)
outer membrane protein (porin) id=12498486 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
outer membrane protein (porin)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1380_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22043..22459)
DNA (417bp) protein (139aa)
OsmC/Ohr family protein; K07397 putative redox protein id=12498487 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
OsmC/Ohr family protein; K07397 putative redox protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1380_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22456..23229)
DNA (774bp) protein (258aa)
transmembrane protein id=12498488 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
transmembrane protein
Probable transmembrane protein {ECO:0000313|EMBL:AAZ96405.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1380_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23343..23780
DNA (438bp) protein (146aa)
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=12498489 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_1380_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23790..24182
DNA (393bp) protein (131aa)
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=12498490 bin=THIO_MID species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1380_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24285..25313
DNA (1029bp) protein (343aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] id=12498491 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 34 in total

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