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SCNpilot_expt_500_bf_scaffold_514

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_514_1
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104..394
DNA (291bp) protein (97aa)
DNA polymerase beta domain-containing protein n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0JM05_ALCFA
DNA polymerase beta domain-containing protein {ECO:0000313|EMBL:BAP89372.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
nucleotidyl-transferase; K07075
SCNpilot_expt_500_bf_scaffold_514_2
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

391..753
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82VK8_NITEU
hypothetical protein
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_514_3
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

747..1304
DNA (558bp) protein (186aa)
Resolvase domain protein n=5 Tax=Proteobacteria RepID=C5T7N6_ACIDE rbh
DNA invertase {ECO:0000313|EMBL:ERJ40193.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
resolvase domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_514_4
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1336..3063
DNA (1728bp) protein (576aa)
sodium:proton antiporter n=1 Tax=Cupriavidus sp. WS RepID=UPI0003757BCD rbh
TrkA-N:Sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_514_5
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3081..3968)
DNA (888bp) protein (296aa)
Usp-like protein n=3 Tax=Azotobacter vinelandii RepID=C1DGW4_AZOVD rbh
Usp-like protein rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_514_6
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3995..6733)
DNA (2739bp) protein (913aa)
Cation transportingP-type ATPase n=3 Tax=Azotobacter vinelandii RepID=C1DGW3_AZOVD rbh
Cation transportingP-type ATPase rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_514_7
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6904..7788
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00035F18B4 rbh
uspA; UspA rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_514_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7791..7991
DNA (201bp) protein (67aa)
Phage transcriptional regulator AlpA n=6 Tax=Pseudomonas RepID=L1M360_PSEPU
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:GAO23812.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
excisionase family DNA binding domain-containing protein
SCNpilot_expt_500_bf_scaffold_514_9
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7988..8338
DNA (351bp) protein (117aa)
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_500_bf_scaffold_514_10
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8345..9067)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AE251
Uncharacterized protein {ECO:0000313|EMBL:AJP47699.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_514_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9630..10136)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003824AE0 rbh
DNA repair protein RadC; K03630 DNA repair protein RadC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_514_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10512..11450
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PP59_9ZZZZ rbh
transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_514_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11447..12316
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PP60_9ZZZZ
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_514_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12482..13156
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037FA685 rbh
Transcriptional activator protein czcR {ECO:0000313|EMBL:CDQ12289.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
two component heavy metal response winged helix family transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR rbh
SCNpilot_expt_500_bf_scaffold_514_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13161..14615
DNA (1455bp) protein (485aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
heavy metal sensor signal transduction histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] rbh
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037F7CA9 rbh
SCNpilot_expt_500_bf_scaffold_514_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14695..15954)
DNA (1260bp) protein (420aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU27_9GAMM rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEM47879.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
SCNpilot_expt_500_bf_scaffold_514_17
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16051..16470)
DNA (420bp) protein (140aa)
Universal stress protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HNF0_PSEUO
UspA domain-containing protein
Tax=CG_Hydro_01
SCNpilot_expt_500_bf_scaffold_514_18
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16467..17639)
DNA (1173bp) protein (391aa)
Glutathione-regulated potassium-proton antiporter n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HMZ9_PSEUO
sodium/hydrogen exchanger rbh
Tax=GWA2_Gallionellales_60_142_curated
SCNpilot_expt_500_bf_scaffold_514_19
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17649..17993)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0H0C9_9GAMM
hypothetical protein
Tax=CG_Hydro_01
SCNpilot_expt_500_bf_scaffold_514_20
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18005..18373)
DNA (369bp) protein (123aa)
Histidine triad (HIT) protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLX9_SIDLE
histidine triad (HIT) protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:ADE12574.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
SCNpilot_expt_500_bf_scaffold_514_21
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18370..18756)
DNA (387bp) protein (129aa)
Putative fluoride ion transporter CrcB n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GYQ4_9GAMM
crcB protein
Tax=CG_Hydro_01
SCNpilot_expt_500_bf_scaffold_514_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19263..20672
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036F296B rbh
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGG89161.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_514_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20669..21712
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036D4873 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89162.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_514_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21709..24825
DNA (3117bp) protein (1039aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003814170 rbh
heavy metal efflux pump, cobalt-zinc-cadmium
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AGG89163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_514_25
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25044..25955)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375ED32
integrase family protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_500_bf_scaffold_514_26
unknown

Not on your lists

26022..26243
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_514_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26671..28164)
DNA (1494bp) protein (498aa)
SpoVR family protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035DCBEA rbh
SpoVR family protein rbh
SpoVR like family protein {ECO:0000313|EMBL:AAZ97187.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_514_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28166..29422)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381EC44 rbh
hypothetical protein; K09786 hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_514_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29433..29606)
DNA (174bp) protein (58aa)
PrkA family serine protein kinase n=1 Tax=Thiobacillus thioparus RepID=UPI000365C770
putative Serine protein kinase, PrkA; K07180 serine protein kinase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_514_30
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29884..30933
DNA (1050bp) protein (350aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX31188.1}; TaxID=1331043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str.; FCAV198.;"
Displaying items 1-30 of 42 in total

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