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SCNpilot_expt_500_bf_scaffold_1535

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1535_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39..1616
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037CAFA4 rbh
glucans biosynthesis protein D; K03670 periplasmic glucans biosynthesis protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1691..2347)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000368E657 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2624..3220)
DNA (597bp) protein (199aa)
IclR family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI0003656D26
IclR family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1535_4
unknown

Not on your lists

comp(3328..3792)
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1535_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3994..5541
DNA (1548bp) protein (516aa)
transketolase n=1 Tax=Thiobacillus thioparus RepID=UPI00035FFC53
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1535_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5538..6872
DNA (1335bp) protein (445aa)
Hrp-dependent type III effector protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003722487 rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_7
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6918..8138)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Pseudomonas sp. 313 RepID=UPI000382CB80 rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT02922.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
SCNpilot_expt_500_bf_scaffold_1535_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8289..9335
DNA (1047bp) protein (349aa)
FAD-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003813312 rbh
glcE; glycolate oxidase FAD binding subunit; K11472 glycolate oxidase FAD binding subunit rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9336..9716
DNA (381bp) protein (127aa)
virulence protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D2D54
ring-cleaving dioxygenase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9718..10881
DNA (1164bp) protein (388aa)
glycolate oxidase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CD2D1
glcF; glycolate oxidase iron-sulfur subunit; K11473 glycolate oxidase iron-sulfur subunit
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10878..11627
DNA (750bp) protein (250aa)
Zn-dependent hydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI0003710539 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11667..12290)
DNA (624bp) protein (208aa)
molybdenum cofactor guanylyltransferase; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D8A3E rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12238..13836)
DNA (1599bp) protein (533aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BC2D8 rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13793..15247)
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000369D3C1 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15362..15568)
DNA (207bp) protein (69aa)
50S ribosomal protein L31 n=1 Tax=Thiobacillus thioparus RepID=UPI00036EFB5F
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15678..16937)
DNA (1260bp) protein (420aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
transcription termination factor Rho n=1 Tax=Thiobacillus thioparus RepID=UPI00037BECBE rbh
rho; transcription termination factor Rho; K03628 transcription termination factor Rho rbh
SCNpilot_expt_500_bf_scaffold_1535_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17047..17373)
DNA (327bp) protein (109aa)
thioredoxin; K03671 thioredoxin 1 id=12495253 bin=THIO_HI species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
thioredoxin; K03671 thioredoxin 1
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17533..17856
DNA (324bp) protein (108aa)
ferredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI00037C60C9
7Fe ferredoxin; K05524 ferredoxin
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17862..20498
DNA (2637bp) protein (879aa)
DNA helicase/exodeoxyribonuclease V subunit B (EC:3.1.11.5); K01144 exodeoxyribonuclease V [EC:3.1.11.5] rbh
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B0050 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_1535_20
unknown

Not on your lists

comp(20782..21159)
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1535_21
unknown

Not on your lists

comp(21205..21627)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1535_22
unknown

Not on your lists

comp(21649..22371)
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1535_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22647..23723
DNA (1077bp) protein (359aa)
DNA helicase/exodeoxyribonuclease V subunit A (EC:3.1.11.5); K01144 exodeoxyribonuclease V [EC:3.1.11.5]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036DA2E4
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23760..24359
DNA (600bp) protein (200aa)
methylase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B0835 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24427..24765
DNA (339bp) protein (113aa)
type 1 pili tip component n=1 Tax=Thiobacillus thioparus RepID=UPI00035CC962
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24899..25138
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003750AC4
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25203..26429
DNA (1227bp) protein (409aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein (EC:2.3.1.35); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
N-acetylglutamate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036F01C0 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26434..26919
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377ADB2 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1535_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26916..28220
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D9D9E rbh
putative GAF sensor protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1535_30
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28228..29223)
DNA (996bp) protein (332aa)
2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313|EMBL:KFB65988.1}; EC=1.2.4.4 {ECO:0000313|EMBL:KFB65988.1};; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
acoB1; acetoin dehydrogenase subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036437C4 rbh
Displaying items 1-30 of 33 in total

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