ggKbase home page

SCNpilot_expt_500_bf_scaffold_3104

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3104_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..574)
DNA (573bp) protein (191aa)
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI0003744428
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_2
unknown

Not on your lists

1066..1266
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3104_3
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1592..2581)
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JW66_BURP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA49823.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_expt_500_bf_scaffold_3104_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2668..4245
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003673E31
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_3104_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4879..5121
DNA (243bp) protein (81aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000369EFEA
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_6
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5199..6362)
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI0003747C9C rbh
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:CDG83381.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
beta-lactamase-like protein
SCNpilot_expt_500_bf_scaffold_3104_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7004..7627)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A7C30 rbh
OmpA/MotB domain-containing protein; K03286 OmpA-OmpF porin, OOP family
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7828..9201)
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377FFF4 rbh
Fis family two component sigma54 specific transcriptional regulator rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9198..10964)
DNA (1767bp) protein (589aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037DA675 rbh
sensor histidine kinase rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10983..12095
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365B0EB rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12104..12550
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003707D79
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_12
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12935..13423
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F3641 rbh
Thermostable hemolysin {ECO:0000313|EMBL:GAO33487.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3104_13
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13420..14904
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EF8A2 rbh
Long-chain acyl-CoA synthetases (AMP-forming) {ECO:0000313|EMBL:EAU55634.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
AMP-dependent synthetase and ligase rbh
SCNpilot_expt_500_bf_scaffold_3104_14
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14922..15581
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364AF9F rbh
Carbamoylphosphate synthase large subunit {ECO:0000313|EMBL:BAP81237.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT-1.;"
carbamoylphosphate synthase large subunit
SCNpilot_expt_500_bf_scaffold_3104_15
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15578..16384
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003767986 rbh
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCNpilot_expt_500_bf_scaffold_3104_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16408..17076
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036CC007 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17073..17210
DNA (138bp) protein (46aa)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17220..18011)
DNA (792bp) protein (264aa)
permease n=1 Tax=Thiobacillus thioparus RepID=UPI00037C7629 rbh
integral membrane protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18334..19533)
DNA (1200bp) protein (400aa)
2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase {ECO:0000255|HAMAP-Rule:MF_01025}; EC=2.3.3.13 {ECO:0000255|HAMAP-Rule:MF_01025};; Alpha-IPM synthase {ECO:0000255|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000255|HAMAP-Rule:MF_01025}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
2-isopropylmalate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003828078
SCNpilot_expt_500_bf_scaffold_3104_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19491..19817)
DNA (327bp) protein (109aa)
2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase {ECO:0000255|HAMAP-Rule:MF_01025}; EC=2.3.3.13 {ECO:0000255|HAMAP-Rule:MF_01025};; Alpha-IPM synthase {ECO:0000255|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000255|HAMAP-Rule:MF_01025}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
2-isopropylmalate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003828078
SCNpilot_expt_500_bf_scaffold_3104_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19910..19999)
DNA (90bp) protein (30aa)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20014..20808)
DNA (795bp) protein (265aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8); K00998 phosphatidylserine synthase [EC:2.7.8.8] rbh
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F964B rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20837..21463)
DNA (627bp) protein (209aa)
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65] rbh
phosphatidylserine decarboxylase n=1 Tax=Thiobacillus thioparus RepID=UPI000372BAA8 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3104_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21557..21718)
DNA (162bp) protein (54aa)
ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
ketol-acid reductoisomerase n=1 Tax=Thiobacillus thioparus RepID=UPI00036F6EC8
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 24 items

View Taxonomy