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SCNpilot_expt_500_bf_scaffold_3478

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3478_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..377
DNA (375bp) protein (125aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02004}; EC=6.1.1.9 {ECO:0000255|HAMAP-Rule:MF_02004};; Valyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02004}; Short=ValRS {ECO:0000255|HAMAP-Rule:MF_02004};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
valyl-tRNA synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B0708
SCNpilot_expt_500_bf_scaffold_3478_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(528..1793)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037DFEF4 rbh
putative long-chain fatty acid transport protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2000..2509)
DNA (510bp) protein (170aa)
NADH dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CBDE8 rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2915..3244)
DNA (330bp) protein (110aa)
sulfurtransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00038011A3
rhodanese-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3345..4283)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C29E7 rbh
DMSO reductase subunit C; K07308 anaerobic dimethyl sulfoxide reductase subunit C (DMSO reductase anchor subunit) rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4319..4699)
DNA (381bp) protein (127aa)
DMSO reductase chain B id=1341754 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
DMSO reductase subunit B
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_3478_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4993..7869)
DNA (2877bp) protein (959aa)
DMSO reductase subunit A; K00183 molybdopterin oxidoreductase, molybdopterin binding subunit [EC:1.2.7.-] rbh
formate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BE463 rbh
DMSO reductase chain A {ECO:0000313|EMBL:AAZ96523.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_3478_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8147..8671)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036DFD94
thiol-disulfide isomerase-like protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_3478_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8662..9393)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003624720 rbh
thiol-disulfide isomerase-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9433..9984)
DNA (552bp) protein (184aa)
molybdenum cofactor biosynthesis protein MoaC n=1 Tax=Thiobacillus thioparus RepID=UPI00037C8804 rbh
GTP cyclohydrolase subunit MoaC; K03637 molybdenum cofactor biosynthesis protein C
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9997..11415
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003650EE0 rbh
M48 family peptidase rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11618..11980
DNA (363bp) protein (121aa)
monoheme cytochrome SoxX id=12495214 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
monoheme cytochrome SoxX
Sulfur oxidation protein SoxX {ECO:0000313|EMBL:AAZ96520.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_3478_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12018..12449
DNA (432bp) protein (144aa)
sulfur oxidation protein SoxY n=1 Tax=Thiobacillus thioparus RepID=UPI000381A352
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12564..12797
DNA (234bp) protein (78aa)
sulfur oxidation protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F3BCA
sulfur compound chelating protein SoxZ
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12867..13712
DNA (846bp) protein (282aa)
cytochrome SoxA n=1 Tax=Thiobacillus thioparus RepID=UPI0003763A9D rbh
diheme cytochrome SoxA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13877..15622
DNA (1746bp) protein (582aa)
Probable sulfur oxidation signal protein, twin-arginine translocation pathway id=1347984 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
sulfate thiol esterase SoxB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_17
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15564..16079)
DNA (516bp) protein (172aa)
putative chromate transport protein id=12553640 bin=BDI species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
putative chromate transport protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_expt_500_bf_scaffold_3478_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16025..16645)
DNA (621bp) protein (207aa)
hypothetical protein FdumT_12410 id=1347985 bin=GWE1_T_denit_62_9 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_3478_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16651..16944)
DNA (294bp) protein (98aa)
hypothetical protein FdumT_12410 id=1347985 bin=GWE1_T_denit_62_9 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17083..18348)
DNA (1266bp) protein (422aa)
Putative uncharacterized protein id=1347986 bin=GWE1_T_denit_62_9 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18342..20075)
DNA (1734bp) protein (578aa)
von Willebrand factor type A id=1347987 bin=GWE1_T_denit_62_9 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
von Willebrand factor A; K07114 uncharacterized protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20072..21091)
DNA (1020bp) protein (340aa)
Putative Von Willebrand factor, type A id=1347988 bin=GWE1_T_denit_62_9 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
von Willebrand factor A; K07114 uncharacterized protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_3478_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21084..21512)
DNA (429bp) protein (143aa)
hypothetical protein id=1347989 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_3478_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21505..22467)
DNA (963bp) protein (321aa)
Putative uncharacterized protein id=1347990 bin=GWE1_T_denit_62_9 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22464..23336)
DNA (873bp) protein (291aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
Putative AAA ATPase id=1345664 bin=GWE1_T_denit_62_9 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_3478_26
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23616..24308
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002F4C9B6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPZ13841.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein rbh
SCNpilot_expt_500_bf_scaffold_3478_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24541..24858
DNA (318bp) protein (106aa)
hypothetical protein id=12495219 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24855..25406)
DNA (552bp) protein (184aa)
lipoprotein signal peptidase n=1 Tax=Thiobacillus thioparus RepID=UPI000375D2A8 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_3478_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25492..25800
DNA (309bp) protein (103aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
alanyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F6BF5
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_500_bf_scaffold_3478_30].
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_3478_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25794..27719
DNA (1926bp) protein (642aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGZ1_9PROT
Displaying items 1-30 of 39 in total

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