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SCNpilot_expt_500_bf_scaffold_3718

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3718_1
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..143
DNA (141bp) protein (47aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GSQ6_THISH
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ACL72960.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_500_bf_scaffold_3718_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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140..424
DNA (285bp) protein (95aa)
parB partition protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI00036E8C1D
Uncharacterized protein {ECO:0000313|EMBL:AKC05753.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3718_3
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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421..906
DNA (486bp) protein (162aa)
Transposon n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GSQ8_THISH
transposon
Transposon {ECO:0000313|EMBL:ACL72962.1}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_500_bf_scaffold_3718_4
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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903..1478
DNA (576bp) protein (192aa)
Conjugal transfer protein TraF n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL24_BORPD rbh
traF1; conjugal transfer protein TraF rbh
Conjugal transfer protein TraF {ECO:0000313|EMBL:CAP42530.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_500_bf_scaffold_3718_5
Pseudomonas monteilii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1475..1906
DNA (432bp) protein (144aa)
UPI0003D5B681 related cluster n=1 Tax=unknown RepID=UPI0003D5B681
Uncharacterized protein {ECO:0000313|EMBL:AHC89242.1}; TaxID=1435058 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas monteilii SB3101.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3718_6
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1903..3861
DNA (1959bp) protein (653aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUX8_POLNA rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_500_bf_scaffold_3718_7
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4364..4798)
DNA (435bp) protein (145aa)
Transcriptional regulator, MerR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12BD4_POLSJ
putative transcriptional regulator MerR; K08365 MerR family transcriptional regulator, mercuric resistance operon regulatory protein
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE44158.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_expt_500_bf_scaffold_3718_8
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4870..5220
DNA (351bp) protein (117aa)
Mercuric ion transport protein n=2 Tax=root RepID=Q934S7_ACIFR
Mercuric ion transport protein; K08363 mercuric ion transport protein
Tax=CG_Rhodocyc_01
SCNpilot_expt_500_bf_scaffold_3718_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5233..5508
DNA (276bp) protein (92aa)
Mercuric transport protein periplasmic component n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9Y4_ALIDK
mercuric transport protein periplasmic component; K08364 periplasmic mercuric ion binding protein
Periplasmic mercury ion-binding protein {ECO:0000256|RuleBase:RU361212}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_3718_10
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5532..5954
DNA (423bp) protein (141aa)
Putative mercury transport protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82W55_NITEU
merC; mercury transport protein MerC
Putative mercury transport protein {ECO:0000313|EMBL:CAD84751.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_500_bf_scaffold_3718_11
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5993..7009
DNA (1017bp) protein (339aa)
mercuric reductase (EC:1.16.1.1)
Mercuric reductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9Y3_ALIDK
Tax=CG_Rhodocyc_01
SCNpilot_expt_500_bf_scaffold_3718_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6975..7631
DNA (657bp) protein (219aa)
putative mercuric reductase; K00520 mercuric reductase [EC:1.16.1.1]
Mercuric reductase {ECO:0000256|RuleBase:RU361223}; EC=1.16.1.1 {ECO:0000256|RuleBase:RU361223};; Hg(II) reductase {ECO:0000256|RuleBase:RU361223}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Putative mercuric reductase n=1 Tax=Alishewanella aestuarii B11 RepID=J1Q275_9ALTE
SCNpilot_expt_500_bf_scaffold_3718_13
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7649..8014
DNA (366bp) protein (122aa)
HTH-type transcriptional regulator merD n=2 Tax=Rhodocyclaceae RepID=F5RFN2_9RHOO
HTH-type transcriptional regulator merD {ECO:0000313|EMBL:EGK70646.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
transcriptional regulator MerD
SCNpilot_expt_500_bf_scaffold_3718_14
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8011..8247
DNA (237bp) protein (79aa)
Mercury resistance protein MerE n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=A4F3B5_NITEU
Mercury resistance protein MerE {ECO:0000313|EMBL:CAM57836.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
putative mercury resistance protein
SCNpilot_expt_500_bf_scaffold_3718_15
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8244..8642
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82W58_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD84748.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_500_bf_scaffold_3718_16
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8708..9235
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82W58_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD84748.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_500_bf_scaffold_3718_17
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10719..11828
DNA (1110bp) protein (370aa)
Copper-translocating P-type ATPase {ECO:0000313|EMBL:AJZ56232.1}; EC=3.6.3.4 {ECO:0000313|EMBL:AJZ56232.1};; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
heavy metal translocating P-type ATPase (EC:3.6.3.-)
Heavy metal translocating P-type ATPase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHW9_9GAMM
SCNpilot_expt_500_bf_scaffold_3718_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11913..12161
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL86811.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_bf_scaffold_3718_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12368..12790
DNA (423bp) protein (141aa)
MerR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX1_9GAMM
MerR family transcriptional regulator {ECO:0000313|EMBL:EIL86812.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative MerR family regulatory protein
SCNpilot_expt_500_bf_scaffold_3718_20
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12806..13078
DNA (273bp) protein (91aa)
Thioredoxin/glutaredoxin n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX2_9GAMM
Glutaredoxin family protein {ECO:0000313|EMBL:AJZ56031.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
thioredoxin/glutaredoxin
SCNpilot_expt_500_bf_scaffold_3718_21
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13162..13857
DNA (696bp) protein (232aa)
Putative cytochrome c biogenesis protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX3_9GAMM
Cytochrome C biogenesis transmembrane region family protein {ECO:0000313|EMBL:AJZ56257.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
cytochrome c biogenesis protein, transmembrane region
SCNpilot_expt_500_bf_scaffold_3718_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13894..14679
DNA (786bp) protein (262aa)
Major facilitator transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX4_9GAMM
Major facilitator transporter {ECO:0000313|EMBL:EIL86815.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
MFS transporter
SCNpilot_expt_500_bf_scaffold_3718_23
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14676..15086
DNA (411bp) protein (137aa)
Major facilitator transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX4_9GAMM
Major Facilitator Superfamily protein {ECO:0000313|EMBL:AJZ56350.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
major facilitator transporter
SCNpilot_expt_500_bf_scaffold_3718_24
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15191..15442
DNA (252bp) protein (84aa)
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_expt_500_bf_scaffold_3718_25
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15506..16108
DNA (603bp) protein (201aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM39474.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Displaying 25 items

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