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SCNpilot_expt_500_bf_scaffold_2238

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2238_1
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..92
DNA (90bp) protein (30aa)
cbbM; ribulose bisphosphate carboxylase, large subunit (EC:4.1.1.39)
cbbM; ribulose bisphosphate carboxylase (EC:4.1.1.39); K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] id=12493636 bin=THIO_HI species=Limnohabitans sp. Rim47 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_expt_500_bf_scaffold_2238_2
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(310..432)
DNA (123bp) protein (41aa)
Tax=RBG_16_Gammaproteobacteria_62_13__curated
SCNpilot_expt_500_bf_scaffold_2238_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

615..983
DNA (369bp) protein (123aa)
ATPase AAA n=1 Tax=Thiobacillus thioparus RepID=UPI00036F53F7
CbbQ/NirQ/NorQ domain-containing protein; K04748 nitric oxide reductase NorQ protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2238_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1026..3023
DNA (1998bp) protein (666aa)
von Willebrand factor A n=1 Tax=Thiobacillus thioparus RepID=UPI00035FE92D
cbbO2; rubisco activation protein CbbO
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2238_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3494..4630)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036235FD rbh
putative signaling protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_2238_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4939..5604
DNA (666bp) protein (222aa)
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] rbh
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EFE73 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2238_7
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5640..6125
DNA (486bp) protein (162aa)
methionine sulfoxide reductase B (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000380052D rbh
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_expt_500_bf_scaffold_2238_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6156..6482)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037AC4F3
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_2238_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6487..7146)
DNA (660bp) protein (220aa)
glutathione S-transferase domain-containing protein; K04097 glutathione S-transferase [EC:2.5.1.18]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003679260 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_2238_10
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7244..8191)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035ED5D7 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE97681.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2238_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8349..9635
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D0CD0 rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2238_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9632..10600
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365ED80 rbh
methyltransferase rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2238_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10607..11755)
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038266CE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ97233.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_2238_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11790..12914)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B200D
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
SCNpilot_expt_500_bf_scaffold_2238_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13609..13881)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377E898
Uncharacterized protein {ECO:0000313|EMBL:AHG92268.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2238_16
unknown

Not on your lists

comp(14547..14663)
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 16 items

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