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SCNpilot_expt_500_bf_scaffold_2308

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2308_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1057)
DNA (1056bp) protein (352aa)
molecular chaperone GroEL n=1 Tax=Thiobacillus thioparus RepID=UPI00037424B0
chaperonin GroEL (Hsp60, Cpn10); K04077 chaperonin GroEL
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_2308_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1054..1380)
DNA (327bp) protein (109aa)
molecular chaperone GroEL n=1 Tax=Thiobacillus denitrificans RepID=UPI000375EA6A
chaperonin GroEL (Hsp60, Cpn10); K04077 chaperonin GroEL
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1429..1719)
DNA (291bp) protein (97aa)
molecular chaperone GroES n=1 Tax=Thiobacillus thioparus RepID=UPI0003626FE5
groES; co-chaperonin GroES; K04078 chaperonin GroES
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_2308_4
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3004..3876
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G6W1_HERAR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAL62248.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_expt_500_bf_scaffold_2308_5
unknown

Not on your lists

3925..4101
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2308_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4098..5009
DNA (912bp) protein (304aa)
gcn5-related n-acetyltransferase; K06140 regulator of nucleoside diphosphate kinase id=12549651 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
gcn5-related n-acetyltransferase; K06140 regulator of nucleoside diphosphate kinase rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_2308_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5457..6770
DNA (1314bp) protein (438aa)
aminotransferase (EC:2.6.1.-); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] rbh
adenosylmethionine--8-amino-7-oxononanoate aminotransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003622E94 rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6849..7481
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000379439A rbh
transcriptional regulator, TetR family
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7478..7957
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A1EA0
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7969..9156
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037934ED rbh
RND family efflux transporter MFP subunit rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9169..10401
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000368183C rbh
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10413..11033
DNA (621bp) protein (207aa)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI000382B6A7 rbh
ABC transporter; K02003 putative ABC transport system ATP-binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_2308_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11030..12493
DNA (1464bp) protein (488aa)
metallo-beta-lactamase n=1 Tax=Thiobacillus thioparus RepID=UPI0003774EFF rbh
metallo-beta-lactamase superfamily protein; K07576 metallo-beta-lactamase family protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_2308_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12504..13562
DNA (1059bp) protein (353aa)
phospholipase (EC:3.1.1.32); K01058 phospholipase A1 [EC:3.1.1.32] rbh
Phospholipase {ECO:0000313|EMBL:AAZ96049.1}; EC=3.1.1.32 {ECO:0000313|EMBL:AAZ96049.1};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003605713 rbh
SCNpilot_expt_500_bf_scaffold_2308_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13566..14420)
DNA (855bp) protein (285aa)
serine protease; K01362 [EC:3.4.21.-] rbh
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000362B7D8 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_2308_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14435..15715
DNA (1281bp) protein (427aa)
UDP-glucose/GDP-mannose dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-]
UDP-N-acetyl-D-galactosamine dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI000365CC0F rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15715..16137
DNA (423bp) protein (141aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
Vi polysaccharide biosynthesis protein vipB/tviC n=1 Tax=Thiobacillus thioparus RepID=UPI000369A316
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16134..16694
DNA (561bp) protein (187aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
Vi polysaccharide biosynthesis protein vipB/tviC n=1 Tax=Thiobacillus thioparus RepID=UPI000369A316
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_2308_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16768..18069
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003678F3B
signal transduction protein
Predicted signal transduction protein {ECO:0000313|EMBL:AAZ96053.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_2308_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18014..18364
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003678F3B
signal transduction protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_2308_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18430..19884
DNA (1455bp) protein (485aa)
D-alanyl-D-alanine carboxypeptidase PBP3 (EC:3.4.16.4); K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] rbh
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C65DF rbh
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 21 items

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