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SCNpilot_expt_500_bf_scaffold_2662

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2662_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..889
DNA (888bp) protein (296aa)
CzcC family heavy metal RND efflux outer membrane protein id=12498617 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
CzcC family heavy metal RND efflux outer membrane protein
Heavy metal RND efflux outer membrane protein, CzcC family {ECO:0000313|EMBL:AAZ97288.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_2662_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1379..2326
DNA (948bp) protein (316aa)
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=12498616 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
Secretion protein HlyD {ECO:0000313|EMBL:AAZ97287.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_2662_3
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2323..5463
DNA (3141bp) protein (1047aa)
cation transporter n=1 Tax=Thiobacillus thioparus RepID=UPI000364E5EE rbh
Cation transporter {ECO:0000313|EMBL:AJP49195.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
heavy metal efflux pump CzcA; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
SCNpilot_expt_500_bf_scaffold_2662_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5746..6387)
DNA (642bp) protein (214aa)
cytochrome c family protein id=12497668 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
cytochrome c family protein
Cytochrome c family protein {ECO:0000313|EMBL:BAN36056.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_500_bf_scaffold_2662_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6631..6993)
DNA (363bp) protein (121aa)
hypothetical protein; K07810 Cu(I)/Ag(I) efflux system periplasmic protein CusF id=12498715 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein; K07810 Cu(I)/Ag(I) efflux system periplasmic protein CusF
Uncharacterized protein {ECO:0000313|EMBL:AAZ97279.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_2662_6
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7143..8150)
DNA (1008bp) protein (336aa)
copper resistance protein B id=12498714 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
copper resistance protein B
Copper resistance protein B {ECO:0000313|EMBL:BAN36057.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_500_bf_scaffold_2662_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8181..9905)
DNA (1725bp) protein (575aa)
copper-resistance protein CopA id=12498713 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
copper-resistance protein CopA rbh
Copper-resistance protein CopA {ECO:0000313|EMBL:AAZ97277.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_2662_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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9997..10689
DNA (693bp) protein (231aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DE49F rbh
two component heavy metal response transcriptional regulator rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_2662_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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10686..12071
DNA (1386bp) protein (462aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E79A1 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_2662_10
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12724..13572)
DNA (849bp) protein (283aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
putative undecaprenyl-diphosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27] rbh
Undecaprenyl-diphosphatase n=2 Tax=Ralstonia RepID=E2SSG4_9RALS rbh
SCNpilot_expt_500_bf_scaffold_2662_11
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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13788..14189
DNA (402bp) protein (134aa)
Transcriptional regulator, ArsR family n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5EKA7_ACIF5
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CDQ10254.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2662_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14189..16081
DNA (1893bp) protein (631aa)
Putative cadmium-transporting ATPase {ECO:0000313|EMBL:CDQ10253.1}; EC=3.6.3.3 {ECO:0000313|EMBL:CDQ10253.1};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5] rbh
Heavy metal translocating P-type ATPase n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5EKA8_ACIF5 rbh
Displaying 12 items

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