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SCNpilot_expt_500_bf_scaffold_16994_2

Organism: scnpilot_expt_500_bf_thiobacillus1

near complete RP 49 / 55 MC: 4 BSCG 49 / 51 MC: 7 ASCG 12 / 38 MC: 2
Location: comp(1590..1889)

Top 3 Functional Annotations

Value Algorithm Source
conjugal transfer protein TrbD n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ED53C similarity UNIREF
DB: UNIREF100
  • Identity: 93.6
  • Coverage: 94.0
  • Bit_score: 181
  • Evalue 4.00e-43
trbD1; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3 similarity KEGG
DB: KEGG
  • Identity: 88.3
  • Coverage: 94.0
  • Bit_score: 167
  • Evalue 1.90e-39
Conjugal transfer protein TrbD {ECO:0000313|EMBL:CAP42551.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.3
  • Coverage: 94.0
  • Bit_score: 167
  • Evalue 8.40e-39

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Taxonomy

Bordetella petrii → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 300
ATGAACGCGGCTGGCATGAATGCGCCAACCACTAATACAGCGAGCTTCGCGAATGGCTTCGAGATTCCGCTGCATCGCTCGCTGACCGAACCGATTCTGCTGGGTGGCGCGCCGCGCACCGTGGCGATTGCCAACGGCACGCTGGCCGCGGCCGTTGGGCTCGGGCTGCAACTCTGGTTGCCCGGCATGGTGCTGTGGATCGTCGGGCACTCGCTGGCCGTGTGGGGCGCGCGAGTGGATGCGCAGTTCATGGCGGTCTTCGCTCGGCACATCAAGCACCGGCAGTTGCTGGACGTGTGA
PROTEIN sequence
Length: 100
MNAAGMNAPTTNTASFANGFEIPLHRSLTEPILLGGAPRTVAIANGTLAAAVGLGLQLWLPGMVLWIVGHSLAVWGARVDAQFMAVFARHIKHRQLLDV*