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SCNpilot_expt_500_bf_scaffold_942

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_942_1
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..889)
DNA (888bp) protein (296aa)
ABC transporter substrate-binding protein, partial n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B55127 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC64336.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
sugar-binding lipoprotein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_942_2
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

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comp(983..2032)
DNA (1050bp) protein (350aa)
transcriptional regulator n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B77C6F rbh
periplasmic binding protein/LacI transcriptional regulator rbh
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ABS01605.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
SCNpilot_expt_500_bf_scaffold_942_3
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2128..3612
DNA (1485bp) protein (495aa)
MFS transporter n=1 Tax=Microbacterium sp. B19 RepID=UPI0003469686 rbh
permease of the major facilitator superfamily rbh
Permease of the major facilitator superfamily {ECO:0000313|EMBL:BAJ74631.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_942_4
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3808..4446)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B38C13
Maltose ABC transporter permease protein {ECO:0000313|EMBL:GAD33851.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
SCNpilot_expt_500_bf_scaffold_942_5
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4700..6952)
DNA (2253bp) protein (751aa)
hypothetical protein; K05989 alpha-L-rhamnosidase [EC:3.2.1.40] rbh
Uncharacterized protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NAI1_MICTS rbh
Uncharacterized protein {ECO:0000313|EMBL:BAJ74637.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_942_6
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7072..8118
DNA (1047bp) protein (349aa)
Transcriptional regulator n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NAH7_MICTS rbh
transcriptional regulator; K02529 LacI family transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:BAJ74633.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_942_7
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8126..9439)
DNA (1314bp) protein (438aa)
pdhC; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] rbh
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Microbacterium sp. B19 RepID=UPI00034712E2 rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component {ECO:0000313|EMBL:BAJ74627.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_942_8
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9554..10531)
DNA (978bp) protein (326aa)
pdhB; pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B0DE0 rbh
Pyruvate dehydrogenase {ECO:0000313|EMBL:KEP76025.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_expt_500_bf_scaffold_942_9
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(10528..11058)
DNA (531bp) protein (177aa)
pdhA; pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
pyruvate dehydrogenase E1 subunit alpha n=1 Tax=Microbacterium sp. B19 RepID=UPI0003499093
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit {ECO:0000313|EMBL:BAJ74625.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_942_10
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11730..13385)
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI000349383C rbh
amidohydrolase-family protein
Amidohydrolase-family protein {ECO:0000313|EMBL:AGZ39070.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
SCNpilot_expt_500_bf_scaffold_942_11
unknown

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comp(13382..14032)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B7A270 rbh
SCNpilot_expt_500_bf_scaffold_942_12
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14215..16938
DNA (2724bp) protein (908aa)
RND transporter n=1 Tax=Microbacterium sp. B19 RepID=UPI00034A6D4C rbh
Predicted RND superfamily drug exporter {ECO:0000313|EMBL:CCH80375.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
putative RND superfamily drug exporter; K06994 putative drug exporter of the RND superfamily rbh
SCNpilot_expt_500_bf_scaffold_942_13
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16935..18818
DNA (1884bp) protein (628aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003456D9B rbh
Putative YhgE/Pip N-terminal domain protein {ECO:0000313|EMBL:CCH80374.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
hypothetical protein; K01421 putative membrane protein
SCNpilot_expt_500_bf_scaffold_942_14
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18815..19513
DNA (699bp) protein (233aa)
transcriptional regulator n=1 Tax=Microbacterium sp. B19 RepID=UPI000344D9E4 rbh
two-component system response regulator
Two-component system response regulator {ECO:0000313|EMBL:BAK34059.1}; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
SCNpilot_expt_500_bf_scaffold_942_15
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19517..20902
DNA (1386bp) protein (462aa)
two-component system histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1032480 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
hypothetical protein, partial n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B688F3 rbh
SCNpilot_expt_500_bf_scaffold_942_16
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20916..22424)
DNA (1509bp) protein (503aa)
beta-xylosidase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003462BA8 rbh
beta-xylosidase rbh
Beta-xylosidase {ECO:0000313|EMBL:ACZ22038.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
SCNpilot_expt_500_bf_scaffold_942_17
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22433..23509)
DNA (1077bp) protein (359aa)
hisC2; histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
Putative phenylalanine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01513}; EC=2.6.1.- {ECO:0000256|HAMAP-Rule:MF_01513};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
aminotransferase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003484793 rbh
SCNpilot_expt_500_bf_scaffold_942_18
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23569..23973
DNA (405bp) protein (135aa)
Predicted membrane protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NAG7_MICTS
hypothetical protein; K08972 putative membrane protein
Predicted membrane protein {ECO:0000313|EMBL:BAJ74623.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_942_19
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24008..24514
DNA (507bp) protein (169aa)
ptpA; protein-tyrosine-phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] rbh
protein-tyrosine-phosphatase n=1 Tax=Microbacterium sp. B19 RepID=UPI000346FC15 rbh
Protein tyrosine phosphatase {ECO:0000313|EMBL:KEP76021.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_expt_500_bf_scaffold_942_20
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24542..25921
DNA (1380bp) protein (460aa)
purB; adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2] rbh
adenylosuccinate lyase n=1 Tax=Microbacterium sp. B19 RepID=UPI000349B6E6 rbh
Adenylosuccinate lyase {ECO:0000313|EMBL:KEP76020.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_expt_500_bf_scaffold_942_21
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26270..26641
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NAG4_MICTS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ74620.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_942_22
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26638..28404
DNA (1767bp) protein (589aa)
Uncharacterized protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NAG4_MICTS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAJ74620.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
Displaying 22 items

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