ggKbase home page

SCNpilot_expt_500_bf_scaffold_1951

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1951_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..605)
DNA (603bp) protein (201aa)
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] id=12497713 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47]
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1951_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(652..1344)
DNA (693bp) protein (231aa)
hypothetical protein id=12497712 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_1951_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1360..2259)
DNA (900bp) protein (300aa)
hypothetical protein id=12497711 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Membrane protein, putative {ECO:0000313|EMBL:AAZ97745.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1951_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2264..3154)
DNA (891bp) protein (297aa)
hypothetical protein id=12497710 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1951_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3192..4580)
DNA (1389bp) protein (463aa)
chain length determinant protein id=12497709 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
chain length determinant protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_1951_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4591..5316)
DNA (726bp) protein (242aa)
polysaccharide export outer membrane protein; K01991 polysaccharide export outer membrane protein id=12497708 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
polysaccharide export outer membrane protein; K01991 polysaccharide export outer membrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1951_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5541..6800)
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003756945
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1951_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6797..7456)
DNA (660bp) protein (220aa)
CAAX amino terminal protease n=1 Tax=Thiobacillus thioparus RepID=UPI00035E0A2E
CAAX amino terminal protease family protein; K07052 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1951_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7558..8517)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377D4DF rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_1951_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8759..10807)
DNA (2049bp) protein (683aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C8577
long-chain fatty acid transport protein; K06076 long-chain fatty acid transport protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_1951_11
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11033..12856)
DNA (1824bp) protein (608aa)
sulfotransferase id=12493065 bin=THIO_HI species=Fodinicurvata sediminis genus=Fodinicurvata taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
sulfotransferase rbh
Tax=RBG_16_Planctomycetes_64_12_curated
SCNpilot_expt_500_bf_scaffold_1951_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13155..13844)
DNA (690bp) protein (230aa)
id=12493686 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97753.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1951_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14288..14548)
DNA (261bp) protein (87aa)
id=12493687 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_1951_14
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14561..14842)
DNA (282bp) protein (94aa)
RelE/StbE family addiction module toxin; K06218 RelE protein id=12493688 bin=THIO_HI species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:GAO34802.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RelE/StbE family addiction module toxin; K06218 RelE protein
SCNpilot_expt_500_bf_scaffold_1951_15
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14832..15086)
DNA (255bp) protein (85aa)
prevent-host-death family protein id=12493689 bin=THIO_HI species=Thiocystis violascens genus=Thiocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:AFL74985.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
SCNpilot_expt_500_bf_scaffold_1951_16
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15518..16561
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B53AEC rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_500_bf_scaffold_1951_17
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17274..17678)
DNA (405bp) protein (135aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
putative nucleic acid-binding protein, contains PIN domain id=12493692 bin=THIO_HI species=Thiorhodococcus drewsii genus=Thiorhodococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative nucleic acid-binding protein, contains PIN domain
SCNpilot_expt_500_bf_scaffold_1951_18
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17681..17920)
DNA (240bp) protein (80aa)
virulence-associated protein VapB-like protein id=12493693 bin=THIO_HI species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=THIO_HI organism_group=Betaproteobacteria
SpoVT/AbrB domain-containing protein {ECO:0000313|EMBL:CDH45899.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
virulence-associated protein VapB-like protein
SCNpilot_expt_500_bf_scaffold_1951_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18043..18183)
DNA (141bp) protein (47aa)
undecaprenyl-phosphate galactosephosphotransferase (EC:2.7.8.6); K03606 putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase id=12493694 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
undecaprenyl-phosphate galactosephosphotransferase (EC:2.7.8.6); K03606 putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 19 items

View Taxonomy