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SCNpilot_expt_500_bf_scaffold_296_3

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN1_62_76

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: 1831..5388

Top 3 Functional Annotations

Value Algorithm Source
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase id=12493201 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 999.99
  • Bit_score: 2356
  • Evalue 0.0
  • rbh
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:AAZ96995.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.8
  • Coverage: 922.0
  • Bit_score: 1227
  • Evalue 0.0
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase similarity KEGG
DB: KEGG
  • Identity: 67.8
  • Coverage: 922.0
  • Bit_score: 1227
  • Evalue 0.0

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3558
ATGTCTAGCCTGGACGCCATGAACGCTCCTCCACACCCATCTGCCACCGCTCAGGGCGACCTCCAGCATTTTGCGCTGCTGGAGGCAAGCGTTGCCCGCCTGAACGATATCGTGCTCATCACGGAAGCCGAGCCCCTGGACGAACCCGGACCGCGCATCGTGTTCGTCAACGATGCGTTCGAGCGGCTCACCGGCCATCGGCGCGAAGAGGTATTGGGGAAATCACCCCGCTTCCTGCACGGCCCCCTGACCGACCGCCACGAGCTCGACCGCATCCGTGCTGCGCTGGAAGCCCGGCTGCCGGTGCACAGCGAGCTCGTCAACTACACCCGGGCGGGCGAGCCCTTCTGGCTTGATCTTGACATTGTTCCCGTCGTCGATGCCGCGGGCCGGCACACCCACTTCGTGGCGGTACAGCGCGACATCACCGAACGCAAGCGGGTTCTGCAGGCCCTGTACGAAAACGAGCAGCGCTTCCAGGCGGTCGCGCGCGCCAACTCCGATACCATCTGGGACTGGGACCTGATTTCCGACCGTATCTGGTGGAACGAGGGCATGCAAAGCACTTTCGGCCACGAACCCGCCGATCTGCCTGCCGACAGCAGTTCCTGGACGCGGTATCTCCATCCCGACGATCATGATCGCGTATTGAAAAGCATCCATCAGGTGATCGACAGCGGCGGCACCAACTGGGCCGCCGAATACCGCTTCCTGCGCAGAAGCGGCGAATATGCCTATGTGCTGGATCGCGGCTCGGTGATCCGCGACGACAACGGACGCGCCCTCCGCATGGTCGGCGGCATCACGGATCTCAGCAGCCGTAATGAAGCGGCAATTGAACTGGCGCGCCTCAACCGTGCCCTGCGCATGCGAAGCGCCTGCAACGAAATCGTGATTCATGCGACAGACGAGAAAGGCTTGCTGGACGAGATCTGCCGCATCGCCGTCGAGGTGGGCGGCTATCGCATGGCCTGGATCGGCTATACCCGGGATGATGCCGAACAATCGGTCGCACCCGTCGCCTGGGCAGGCCAGGGCACCCGCTATCTGCAGGACATCCCGCTCAGCTGGTCCGACGACAAGGCCGTGGGGCGCGGACCGGTGGGGCGGGCGATACGCAGCAACCAGGTGGTCATGATCGAGGACCTGGAAAGCGACCCCAGTTTCGAACCCTGGCGCAAAGCCGCCTTGCACCACGGTTATCGCAGCCTGGTGGTACTGCCCATGCACGACGGCCAGCATGCCTACGGGACATTTGCGCTGTTTTCGCCAGGCACCCGCCACTTCGGCGCCGAAGAAATCCGCCTGCTGCAGGAACTGACCGGCGATCTGGCATTTGCCATCGCCACCCTGCGCAGCCGCCTCGAACAGAGCCGGATCCAGGCGGCCGTGCTGAAAATCGCCGCGGGCGTATCCGCCAATTCGGGCAAGGCCTTTTTCGAGGAACTGGTCATCAACATGACCGAAGCACTCGGCGCCAGTGCCGGGTTCATTGCGCGCCTCCAGCCCGGCGAACCCGCCTCGGCGCGTACCGAGGTGGCCTACATGGACGGACGGCTGCTTCCCAATTTCAGCTATCAGCTTTCCGGCACGCCCTGCCAGCACCTCGGCGACACGCCCAATTATGTGATTCCCGCCCGCGTCTGCGAGCTCTTCCCCTTTACCGCGAAAGCCAGCGGGAACCGCGCCCAGGCCTATGTGGGACACCGGCTGGACAATTCCGCCGGTCAGCCGATCGGACAATTGTTCGTATTGTTCAACCATCCCCTGCGGGACACGGCCTTCATCACGTCCACGCTGCAGATCTTCGCCACGCGCGTCTCCTCGGAGCTTGAACGTCAGGTCGCCGAAGCCCAGATCCGGCAGCAAGCCTCGCTGCTCGACAAGGCGCAGGACGCCATCATCATGCGCGGCTTCGATCATATCGTCCGTTACTGGAACAAGGGTGCCGAACGCCTGTATGGCTGGACGCGCGAGCAGGCCGTCGGCCAGTCGATCGAAACCCTGCTCTACGAGGATGCGTCATTGTTTCGTGAATGTACCCACACCCTGCTGGAACAGGGTGAATGGAGCGGCGAAATCACACAGCATCGCAAGGATGGCAGCACGCTCATCGTCGAAGCCCACTGGACCCTGCTGCGCGATGAAAACCAGGTACCCGATGCCATTCTCGGCATCAACACCGACATCACGGAACGCAAGGCCGCCGAACTCGAAATCCAGTATCTGGCGTTTTACGACCCGCTCACCGGCCTGCCCAACCGCCAGTTATTGCACGACCGCCTGCAGCATGCCCTGGCGGTCGAAGCCCGGCTGTCGAAGGTGGGCGCCCTGCTCTTCCTCGATGTCGACAATTTCAAGGCCCTGAACGACACGCTGGGCCATGCCATCGGCGATCTGTTCCTGCAGCAGCTTGCCCAGCGCCTGCAGTCCTGCCTGCGCGAGAGCGACACCCTGGCGCGCCTGGGCGGCGATGAATTCGTGATCGTGCTGGAAAATCTGGCGACCACCCCGCATGAAGCCGCCGCGCTCGCCATGGGCGTGGGCGAGAAAATACTCGCCAGTTTCGCCTCGCCCTTTCATCTGTCCGGCTATGTGCACCACAGCACATCGAGTATCGGCGTCACGCTTTTCAACGATCAGCCGGCGACACAGGACGAATTGCGGCAGCGTGCCGATCTCGCCATGTACCAGGCCAAGGCGCAGGGTCGCAATACCCTGCGTTTTTTTGACCCGGCCATGCAGGCAGCCGCGGCCGCCCGCGCCAAACTGGAAGCCGATCTGCGCCACGCCTTGCAGAACCGGATGTTCGAGCTGCATTACCAGGCGCAGATCGACAACCTGGGCCGCCTGTGCGGGGCCGAGGCCCTGCTGCGCTGGCATCACGCCGGGCGTGGCTGGGTCGCACCCGCCGTCTTCATTCCGCTGGCCGAGGAAACCGGCCTCATCCTGGCACTCGGGCAGCAGGTCCTGGAAATCGCCTGCATGCAACTGGTGGCCTGGTCCGCCCAGCCACATATGGCTTCGCTGAATCTGGCTGTGAACGTCAGTGCGCGCCAGTTCCACCAGCCGGATTTCGTGCCTCAGGTGCTGGATATCATCGACCGCAGCGGCGCCGATCCGCATCGGCTGAAACTGGAACTGACCGAGAGCCTGCTGGTGGACAACATCGAGGAAGTCATCGTCAAGATGAGCGCACTCAAGGCACGCGGCATCGGTTTTTCGCTCGACGATTTCGGCACGGGCTATTCGTCACTGTCGTACCTGAAGCGCTTGCCGCTGGACGAGATCAAGATCGACCAGTCGTTCGTGCGCGACGTGCTGACCGATCCCAACGATGCCTCCATTGCGCACAGCATCCTGGCGCTGGGACAAAGCCTCAATCTCGGCGTGGTCGCCGAAGGGGTGGAAACGGAGGCGCAACATGCCTTTCTTGCCTGCCATGGCTGCCAGACCTATCAGGGCTATCTGTTCAACCGGCCGCAGCCACCCGCCATTTTCGATGCCTGGGCGCATACGCAGCCCGTGCGCCATACCGTGCCCGCCGGGACCCCATGA
PROTEIN sequence
Length: 1186
MSSLDAMNAPPHPSATAQGDLQHFALLEASVARLNDIVLITEAEPLDEPGPRIVFVNDAFERLTGHRREEVLGKSPRFLHGPLTDRHELDRIRAALEARLPVHSELVNYTRAGEPFWLDLDIVPVVDAAGRHTHFVAVQRDITERKRVLQALYENEQRFQAVARANSDTIWDWDLISDRIWWNEGMQSTFGHEPADLPADSSSWTRYLHPDDHDRVLKSIHQVIDSGGTNWAAEYRFLRRSGEYAYVLDRGSVIRDDNGRALRMVGGITDLSSRNEAAIELARLNRALRMRSACNEIVIHATDEKGLLDEICRIAVEVGGYRMAWIGYTRDDAEQSVAPVAWAGQGTRYLQDIPLSWSDDKAVGRGPVGRAIRSNQVVMIEDLESDPSFEPWRKAALHHGYRSLVVLPMHDGQHAYGTFALFSPGTRHFGAEEIRLLQELTGDLAFAIATLRSRLEQSRIQAAVLKIAAGVSANSGKAFFEELVINMTEALGASAGFIARLQPGEPASARTEVAYMDGRLLPNFSYQLSGTPCQHLGDTPNYVIPARVCELFPFTAKASGNRAQAYVGHRLDNSAGQPIGQLFVLFNHPLRDTAFITSTLQIFATRVSSELERQVAEAQIRQQASLLDKAQDAIIMRGFDHIVRYWNKGAERLYGWTREQAVGQSIETLLYEDASLFRECTHTLLEQGEWSGEITQHRKDGSTLIVEAHWTLLRDENQVPDAILGINTDITERKAAELEIQYLAFYDPLTGLPNRQLLHDRLQHALAVEARLSKVGALLFLDVDNFKALNDTLGHAIGDLFLQQLAQRLQSCLRESDTLARLGGDEFVIVLENLATTPHEAAALAMGVGEKILASFASPFHLSGYVHHSTSSIGVTLFNDQPATQDELRQRADLAMYQAKAQGRNTLRFFDPAMQAAAAARAKLEADLRHALQNRMFELHYQAQIDNLGRLCGAEALLRWHHAGRGWVAPAVFIPLAEETGLILALGQQVLEIACMQLVAWSAQPHMASLNLAVNVSARQFHQPDFVPQVLDIIDRSGADPHRLKLELTESLLVDNIEEVIVKMSALKARGIGFSLDDFGTGYSSLSYLKRLPLDEIKIDQSFVRDVLTDPNDASIAHSILALGQSLNLGVVAEGVETEAQHAFLACHGCQTYQGYLFNRPQPPAIFDAWAHTQPVRHTVPAGTP*