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SCNpilot_expt_500_bf_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_296_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(176..1084)
DNA (909bp) protein (303aa)
CobD/CbiB family protein (EC:6.3.1.10); K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10] id=12493203 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
CobD/CbiB family protein (EC:6.3.1.10); K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_296_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1084..1611)
DNA (528bp) protein (176aa)
hypothetical protein id=12493202 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1831..5388
DNA (3558bp) protein (1186aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase id=12493201 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:AAZ96995.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_500_bf_scaffold_296_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5520..7124
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EC9CB
response regulator receiver modulated diguanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_296_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7121..7747)
DNA (627bp) protein (209aa)
hypothetical protein; K07090 id=12493198 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K07090
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7873..8187)
DNA (315bp) protein (105aa)
hypothetical protein; K09137 hypothetical protein id=12493197 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K09137 hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8184..8558)
DNA (375bp) protein (125aa)
camphor resistance protein CrcB; K06199 CrcB protein id=12493196 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
camphor resistance protein CrcB; K06199 CrcB protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_296_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8720..9178)
DNA (459bp) protein (153aa)
hypothetical protein id=12493195 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9242..9601
DNA (360bp) protein (120aa)
molybdenum-pterin-binding protein, molybdate transport system regulatory protein id=12493194 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
molybdenum-pterin-binding protein, molybdate transport system regulatory protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9615..10982)
DNA (1368bp) protein (456aa)
response regulator HsfA id=12493193 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
response regulator HsfA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10979..12493)
DNA (1515bp) protein (505aa)
sensory Transduction Protein Kinase id=12493192 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
sensory Transduction Protein Kinase rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_296_12
unknown

Not on your lists

12714..12965
DNA (252bp) protein (84aa)
hypothetical protein id=12493191 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
SCNpilot_expt_500_bf_scaffold_296_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13023..13763
DNA (741bp) protein (247aa)
hypothetical protein id=12493190 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_296_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13840..15783)
DNA (1944bp) protein (648aa)
collagenase; K08303 putative protease [EC:3.4.-.-] id=12493189 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
collagenase; K08303 putative protease [EC:3.4.-.-]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_296_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15818..16420)
DNA (603bp) protein (201aa)
hypothetical protein id=12493188 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_296_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16810..17349)
DNA (540bp) protein (180aa)
cytochrome b561; K12262 cytochrome b561 id=12493187 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
cytochrome b561; K12262 cytochrome b561
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_296_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17435..17893)
DNA (459bp) protein (153aa)
molybdopterin synthase subunit MoaE; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-] id=12493186 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
molybdopterin synthase subunit MoaE; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_296_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17895..18146)
DNA (252bp) protein (84aa)
molybdopterin synthase subunit MoaD; K03636 molybdopterin synthase sulfur carrier subunit id=12493185 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
molybdopterin synthase subunit MoaD; K03636 molybdopterin synthase sulfur carrier subunit
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18143..19372)
DNA (1230bp) protein (410aa)
molybdopterin molybdochelatase; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] id=12493184 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
molybdopterin molybdochelatase; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_296_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19311..19811)
DNA (501bp) protein (167aa)
molybdopterin-guanine dinucleotide biosynthesis MobB; K03753 molybdopterin-guanine dinucleotide biosynthesis protein B id=12493183 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
molybdopterin-guanine dinucleotide biosynthesis MobB; K03753 molybdopterin-guanine dinucleotide biosynthesis protein B
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_500_bf_scaffold_296_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19892..20908
DNA (1017bp) protein (339aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
GTP cyclohydrolase subunit MoaA; K03639 molybdenum cofactor biosynthesis protein id=12493182 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
GTP cyclohydrolase subunit MoaA; K03639 molybdenum cofactor biosynthesis protein
SCNpilot_expt_500_bf_scaffold_296_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20916..22076)
DNA (1161bp) protein (387aa)
hypothetical protein id=12493181 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22140..23210
DNA (1071bp) protein (357aa)
selenophosphate synthetase (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3] id=12493180 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
selenophosphate synthetase (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_500_bf_scaffold_296_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23211..24152
DNA (942bp) protein (314aa)
hypothetical protein id=12493179 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ96973.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_296_25
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24242..26032)
DNA (1791bp) protein (597aa)
hypothetical protein id=12493178 bin=THIO_HI species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENN88306.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_500_bf_scaffold_296_26
unknown

Not on your lists

comp(26319..26465)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_296_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26649..28682
DNA (2034bp) protein (678aa)
Fis family GAF modulated sigma54 specific transcriptional regulator id=12493177 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Fis family GAF modulated sigma54 specific transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_296_28
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29069..29314)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Pseudomonas denitrificans ATCC 13867 RepID=M4XEP1_PSEDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI23805.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
SCNpilot_expt_500_bf_scaffold_296_29
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30192..31022)
DNA (831bp) protein (277aa)
LysR-family transcriptional regulator TraR n=11 Tax=Pseudomonas aeruginosa RepID=M2ZS83_PSEAI
D-alanyl-D-alanine endopeptidase {ECO:0000313|EMBL:ETD48023.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
LysR-family transcriptional regulator TraR
SCNpilot_expt_500_bf_scaffold_296_30
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31116..31889)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF77 RepID=U8BIK4_PSEAI rbh
Dihydroneopterin aldolase {ECO:0000313|EMBL:KIL05111.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
dsbG; disulfide isomerase/thiol-disulfide oxidase; K03805 thiol:disulfide interchange protein DsbG rbh
Displaying items 1-30 of 51 in total

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