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SCNPILOT_EXPT_300_BF_Thiobacillus_SCN1_62_76

SCNPILOT_EXPT_500_BF_STEP10_Hydrogenophilales_63_81
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 120 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_30953
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1149 bp 61.44 6.31 102.35
SCNpilot_expt_500_bf_scaffold_27992
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1287 bp 59.13 298.37 100.47
SCNpilot_expt_500_bf_scaffold_19433
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
4 2676 bp 58.18 88.38 100.22
SCNpilot_expt_500_bf_scaffold_29707
Species: R_Gammaproteobacteria_38_11 (50%)
2 1208 bp 60.76 48.22 100.08
SCNpilot_expt_500_bf_scaffold_33865
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1001 bp 62.64 361.64 99.80
SCNpilot_expt_500_bf_scaffold_23202
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1534 bp 58.02 239.90 99.74
SCNpilot_expt_500_bf_scaffold_31480
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1122 bp 58.29 132.13 99.73
SCNpilot_expt_500_bf_scaffold_33850
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1002 bp 60.58 110.28 99.70
SCNpilot_expt_500_bf_scaffold_15501
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 2273 bp 68.28 84.25 99.25
SCNpilot_expt_500_bf_scaffold_23685
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1507 bp 62.44 298.11 99.14
SCNpilot_expt_500_bf_scaffold_39872
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1421 bp 57.71 109.43 98.80
SCNpilot_expt_500_bf_scaffold_24647
Species: GWE1_Thiobacillus_62_9_curated (100%)
3 1972 bp 62.32 11.92 98.58
SCNpilot_expt_500_bf_scaffold_11035
Order: Hydrogenophilales (100%)
3 3117 bp 61.53 100.10 98.56
SCNpilot_expt_500_bf_scaffold_2385
Genus: Sulfuricella (63.64%)
11 9050 bp 62.48 74.53 98.29
SCNpilot_expt_500_bf_scaffold_10930
Class: Betaproteobacteria (50%)
4 3149 bp 74.60 90.66 98.03
SCNpilot_expt_500_bf_scaffold_610
Class: Gammaproteobacteria (60%)
15 22088 bp 57.23 49.81 97.56
SCNpilot_expt_500_bf_scaffold_594
Class: Betaproteobacteria (50%)
28 26313 bp 59.51 58.43 97.28
SCNpilot_expt_500_bf_scaffold_2400
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
9 9602 bp 64.26 81.52 97.07
SCNpilot_expt_500_bf_scaffold_743
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
28 22634 bp 63.25 89.63 95.70
SCNpilot_expt_500_bf_scaffold_14620
Species: GWE1_Thiobacillus_62_9_curated (100%)
4 2407 bp 57.33 62.42 95.22
SCNpilot_expt_500_bf_scaffold_398
Order: Hydrogenophilales (84.62%)
26 32996 bp 65.50 87.20 94.63
SCNpilot_expt_500_bf_scaffold_1600
Class: Betaproteobacteria (75%)
12 14929 bp 62.74 72.66 94.57
SCNpilot_expt_500_bf_scaffold_12359
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2808 bp 57.26 56.09 94.34
SCNpilot_expt_500_bf_scaffold_16262
Order: Hydrogenophilales (66.67%)
3 2733 bp 63.15 87.27 94.29
SCNpilot_expt_500_bf_scaffold_7407
Order: Hydrogenophilales (66.67%)
12 9765 bp 62.13 91.30 94.07
SCNpilot_expt_500_bf_scaffold_6084
Order: Hydrogenophilales (100%)
10 8644 bp 64.61 89.34 93.95
SCNpilot_expt_500_bf_scaffold_668
Order: Hydrogenophilales (94.44%)
54 53063 bp 64.47 88.70 93.83
SCNpilot_expt_500_bf_scaffold_260
Order: Hydrogenophilales (87.2%)
125 123210 bp 63.65 77.51 93.71
SCNpilot_expt_500_bf_scaffold_466
Order: Hydrogenophilales (75.76%)
33 31202 bp 64.08 88.45 93.67
SCNpilot_expt_500_bf_scaffold_3887
Order: Hydrogenophilales (90.91%)
11 8648 bp 61.18 61.63 93.46
SCNpilot_expt_500_bf_scaffold_449
Order: Hydrogenophilales (83.33%)
60 70818 bp 63.35 96.27 93.37
SCNpilot_expt_500_bf_scaffold_1545
Species: GWE1_Thiobacillus_62_9_curated (55.56%)
9 11675 bp 62.10 70.94 93.22
SCNpilot_expt_500_bf_scaffold_325
Order: Hydrogenophilales (71.84%)
103 102412 bp 64.30 81.66 92.98
SCNpilot_expt_500_bf_scaffold_1573
Order: Burkholderiales (63.64%)
11 11533 bp 63.78 70.38 92.97
SCNpilot_expt_500_bf_scaffold_552
Order: Hydrogenophilales (87.18%)
39 40027 bp 64.84 100.49 92.85
SCNpilot_expt_500_bf_scaffold_780
Order: Hydrogenophilales (78.79%)
33 35386 bp 64.47 84.11 92.80
SCNpilot_expt_500_bf_scaffold_676
Order: Hydrogenophilales (90.63%)
32 33491 bp 64.66 73.68 92.67
SCNpilot_expt_500_bf_scaffold_528
Order: Hydrogenophilales (65%)
40 46821 bp 63.21 74.73 92.55
SCNpilot_expt_500_bf_scaffold_3304
Order: Hydrogenophilales (70%)
10 7443 bp 63.86 72.99 92.54
SCNpilot_expt_500_bf_scaffold_969
Order: Hydrogenophilales (54.84%)
31 34566 bp 61.67 62.06 92.39
SCNpilot_expt_500_bf_scaffold_3561
Order: Burkholderiales (60%)
5 7814 bp 62.59 63.80 92.14
SCNpilot_expt_500_bf_scaffold_881
Class: Betaproteobacteria (78.95%)
19 16183 bp 60.17 65.69 92.12
SCNpilot_expt_500_bf_scaffold_609
Order: Hydrogenophilales (77.27%)
22 24238 bp 63.36 78.24 92.11
SCNpilot_expt_500_bf_scaffold_312
Order: Hydrogenophilales (93.62%)
94 92000 bp 64.45 77.76 92.10
SCNpilot_expt_500_bf_scaffold_474
Order: Hydrogenophilales (81.47%)
232 218933 bp 63.63 86.28 92.09
SCNpilot_expt_500_bf_scaffold_328
Order: Hydrogenophilales (76.6%)
47 45310 bp 63.95 85.36 92.08
SCNpilot_expt_500_bf_scaffold_1378
Species: GWE1_Thiobacillus_62_9_curated (58.33%)
12 12410 bp 63.70 101.15 91.91
SCNpilot_expt_500_bf_scaffold_498
Order: Hydrogenophilales (86.96%)
46 39957 bp 64.24 120.55 91.82
SCNpilot_expt_500_bf_scaffold_11021
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
7 4638 bp 64.90 121.44 91.66
SCNpilot_expt_500_bf_scaffold_245
Order: Hydrogenophilales (71.94%)
196 192562 bp 63.07 76.57 91.58
Displaying items 1-50 of 120 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.