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SCNpilot_expt_500_bf_scaffold_6797

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6797_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..314)
DNA (312bp) protein (104aa)
2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:AGG88640.1}; EC=1.2.4.2 {ECO:0000313|EMBL:AGG88640.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2-oxoglutarate dehydrogenase E1 component (Fragment) n=1 Tax=Rhodanobacter denitrificans RepID=I4WVE2_9GAMM
SCNpilot_expt_500_bf_scaffold_6797_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(618..1571)
DNA (954bp) protein (318aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKC5_9GAMM rbh
putative acyltransferase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_6797_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1568..1771)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKC4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99915.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6797_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2716..3474)
DNA (759bp) protein (253aa)
Putative transmembrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VP57_9GAMM
Putative transmembrane protein {ECO:0000313|EMBL:EIL88998.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative permease
SCNpilot_expt_500_bf_scaffold_6797_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3615..5489
DNA (1875bp) protein (625aa)
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000256|PIRNR:PIRNR000207, ECO:0000256|SAAS:SAAS00014038}; Short=SiR-FP {ECO:0000256|PIRNR:PIRNR000207};; EC=1.8.1.2 {ECO:0000256|PIRNR:PIRNR000207, ECO:0000256|SAAS:SAAS00013953};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
sulfite reductase (NADPH) flavoprotein, alpha-component (EC:1.8.1.2)
Sulfite reductase [NADPH] flavoprotein alpha-component n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VP58_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_6797_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5573..7213
DNA (1641bp) protein (547aa)
Sulfite reductase [NADPH] hemoprotein beta-component {ECO:0000256|HAMAP-Rule:MF_01540}; Short=SiR-HP {ECO:0000256|HAMAP-Rule:MF_01540};; Short=SiRHP {ECO:0000256|HAMAP-Rule:MF_01540};; EC=1.8.1.2 {ECO:0000256|HAMAP-Rule:MF_01540};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
sulfite reductase (NADPH) hemoprotein, beta-component (EC:1.8.1.2)
Sulfite reductase [NADPH] hemoprotein beta-component n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VP59_9GAMM
SCNpilot_expt_500_bf_scaffold_6797_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7210..7929
DNA (720bp) protein (240aa)
phosphoadenylylsulfate reductase (thioredoxin) (EC:1.8.4.8) rbh
Phosphoadenosine phosphosulfate reductase {ECO:0000256|HAMAP-Rule:MF_00063, ECO:0000256|SAAS:SAAS00055482}; EC=1.8.4.8 {ECO:0000256|HAMAP-Rule:MF_00063, ECO:0000256|SAAS:SAAS00089161};; 3'-phosphoadenylylsulfate reductase {ECO:0000256|HAMAP-Rule:MF_00063}; PAPS reductase, thioredoxin dependent {ECO:0000256|HAMAP-Rule:MF_00063}; PAPS sulfotransferase {ECO:0000256|HAMAP-Rule:MF_00063}; PAdoPS reductase {ECO:0000256|HAMAP-Rule:MF_00063}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xant
Phosphoadenosine phosphosulfate reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVD6_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_6797_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8012..8953)
DNA (942bp) protein (314aa)
Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family n=1 Tax=Rhodanobacter denitrificans RepID=M4NFR0_9GAMM rbh
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family rbh
Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family {ECO:0000313|EMBL:AGG88458.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_6797_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9102..9464
DNA (363bp) protein (121aa)
PadR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W639_9GAMM
PadR family transcriptional regulator {ECO:0000313|EMBL:EIL94930.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative transcriptional regulator
SCNpilot_expt_500_bf_scaffold_6797_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9461..10393
DNA (933bp) protein (311aa)
Sensor protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W640_9GAMM rbh
Sensor protein {ECO:0000313|EMBL:EIL94931.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
sensor protein rbh
SCNpilot_expt_500_bf_scaffold_6797_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10425..10790
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7I3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95424.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6797_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10828..11115)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W643_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94934.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_6797_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11243..11851
DNA (609bp) protein (203aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMD1_9GAMM
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EIM00623.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methyltransferase family protein
SCNpilot_expt_500_bf_scaffold_6797_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11926..13893
DNA (1968bp) protein (656aa)
Oligopeptide transporter, OPT family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD57_9GAMM
Oligopeptide transporter, OPT family protein {ECO:0000313|EMBL:EIL97398.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative oligopeptide transporter, OPT family
SCNpilot_expt_500_bf_scaffold_6797_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13928..15118
DNA (1191bp) protein (397aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89051.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Displaying 15 items

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