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SCNpilot_expt_500_bf_scaffold_11887

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_11887_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..359)
DNA (357bp) protein (119aa)
Putative short chain dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W467_9GAMM
Putative short chain dehydrogenase {ECO:0000313|EMBL:EIL94258.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_expt_500_bf_scaffold_11887_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(353..661)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ6_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_11887_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(658..1923)
DNA (1266bp) protein (422aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ7_9GAMM
NAD-dependent aldehyde dehydrogenase
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:AGG89514.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_11887_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2436..4070)
DNA (1635bp) protein (545aa)
UPF0061 protein UU7_04657 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W470_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_11887_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4215..4763
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W472_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL94263.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_11887_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4787..5155
DNA (369bp) protein (123aa)
Putative Fe-S oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR1_9GAMM
putative Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:AGG89519.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_11887_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5199..5897)
DNA (699bp) protein (233aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pseudouridine synthase family protein (EC:5.4.99.-) rbh
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W474_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_11887_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5894..6175)
DNA (282bp) protein (94aa)
Ribosomal RNA small subunit methyltransferase C n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W475_9GAMM
Ribosomal RNA small subunit methyltransferase C {ECO:0000313|EMBL:EIL94266.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
16S RNA G1207 methylase RsmC
SCNpilot_expt_500_bf_scaffold_11887_9
unknown

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6422..7057
DNA (636bp) protein (212aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_11887_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6988..7791)
DNA (804bp) protein (268aa)
Virulence protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB1_9GAMM
Virulence protein {ECO:0000313|EMBL:EIL89052.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_11887_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7788..9005)
DNA (1218bp) protein (406aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89051.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Displaying 11 items

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