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SCNpilot_expt_500_bf_scaffold_8570

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8570_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..590)
DNA (588bp) protein (196aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Putative arginyl-tRNA--protein transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU84_9GAMM
putative arginyl-tRNA:protein arginylyltransferase
SCNpilot_expt_500_bf_scaffold_8570_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(620..955)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYW5_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_8570_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1005..1379)
DNA (375bp) protein (125aa)
Acyl-CoA thiolesterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYW6_9GAMM
acyl-CoA thioesterase
Acyl-CoA thioesterase {ECO:0000313|EMBL:AGG89795.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8570_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1887..2897)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYW7_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_8570_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3011..3148)
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU88_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03030.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8570_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3247..4023)
DNA (777bp) protein (259aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhodanobacter denitrificans RepID=I4WYX0_9GAMM
DNA-binding domain-containing protein, AraC-type
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:AGG89791.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8570_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4054..4608)
DNA (555bp) protein (185aa)
Negative regulator of beta-lactamase expression n=1 Tax=Rhodanobacter denitrificans RepID=M4NFS7_9GAMM rbh
negative regulator of beta-lactamase expression rbh
Negative regulator of beta-lactamase expression {ECO:0000313|EMBL:AGG89790.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8570_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4695..5222
DNA (528bp) protein (176aa)
Alpha/beta hydrolase superfamily enzyme, predicted hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYX2_9GAMM
alpha/beta hydrolase superfamily enzyme, predicted hydrolase
Alpha/beta hydrolase superfamily enzyme, predicted hydrolase {ECO:0000313|EMBL:AGG89789.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8570_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5219..7255
DNA (2037bp) protein (679aa)
Ribosomal RNA large subunit methyltransferase K/L n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3T7_9GAMM
Ribosomal RNA large subunit methyltransferase K/L {ECO:0000256|HAMAP-Rule:MF_01858, ECO:0000256|SAAS:SAAS00183812}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative N6-adenine-specific DNA methylase
SCNpilot_expt_500_bf_scaffold_8570_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7358..7801
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3T6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94127.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8570_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7994..9244
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU95_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM03037.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TIGR03440 family protein rbh
SCNpilot_expt_500_bf_scaffold_8570_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9241..10230
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY40_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM03038.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative methyltransferase rbh
SCNpilot_expt_500_bf_scaffold_8570_13
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10255..10602)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H553_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:EIQ75895.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8570_14
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10581..11099)
DNA (519bp) protein (173aa)
Uncharacterized isomerase yddE {ECO:0000313|EMBL:CDG83387.1}; EC=5.1.-.- {ECO:0000313|EMBL:CDG83387.1};; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
Phenazine biosynthesis protein, PhzF family n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4B9G4_9ENTR
hypothetical protein; K06998
SCNpilot_expt_500_bf_scaffold_8570_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11175..12146)
DNA (972bp) protein (324aa)
Carboxypeptidase-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3T2_9GAMM
Carboxypeptidase-like protein {ECO:0000313|EMBL:EIL94123.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
carboxypeptidase C (cathepsin A)
SCNpilot_expt_500_bf_scaffold_8570_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12757..13200)
DNA (444bp) protein (148aa)
Thioredoxin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3S8_9GAMM
Thioredoxin {ECO:0000313|EMBL:EIL94119.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thioredoxin
SCNpilot_expt_500_bf_scaffold_8570_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13287..13889)
DNA (603bp) protein (201aa)
Methionine-R-sulfoxide reductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NFR3_9GAMM rbh
methionine-R-sulfoxide reductase rbh
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:AGG89770.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8570_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13933..15618)
DNA (1686bp) protein (562aa)
Cytochrome c biogenesis protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFU9_9GAMM rbh
cytochrome c biogenesis protein rbh
Cytochrome c biogenesis protein {ECO:0000313|EMBL:AGG89769.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8570_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15874..16398
DNA (525bp) protein (175aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3S2_9GAMM
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EIL94113.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA polymerase, sigma subunit, ECF family
SCNpilot_expt_500_bf_scaffold_8570_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16856..17017
DNA (162bp) protein (54aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NI39_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89767.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8570_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17207..17689)
DNA (483bp) protein (161aa)
UPF0234 protein UUC_02196 n=1 Tax=Rhodanobacter denitrificans RepID=I4WY51_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_8570_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17918..19084
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3R9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL94110.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
flavoprotein, HI0933 family rbh
SCNpilot_expt_500_bf_scaffold_8570_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19194..19832
DNA (639bp) protein (213aa)
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3R8_9GAMM rbh
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD {ECO:0000313|EMBL:EIL94109.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
SCNpilot_expt_500_bf_scaffold_8570_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19829..20212
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3R7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94108.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8570_25
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20226..20456)
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JCJ4_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETR77715.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_500_bf_scaffold_8570_26
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20498..20983)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349B097
Uncharacterized protein {ECO:0000313|EMBL:KFN47718.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8570_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21092..21784)
DNA (693bp) protein (231aa)
Phenazine biosynthesis protein PhzF family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY54_9GAMM
phenazine biosynthesis protein PhzF family
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:AGG89763.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8570_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22171..22725
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUB1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03053.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8570_29
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22840..23562
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000317AD2C
histone H1-like protein HC2; K11275 histone H1/5
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_8570_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23664..24068
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY57_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89760.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 42 in total

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