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SCNpilot_expt_500_bf_scaffold_8730

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8730_1
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..663)
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NT35_CHRVO
hypothetical protein; K06876 deoxyribodipyrimidine photolyase-related protein
Putative uncharacterized protein {ECO:0000313|EMBL:AAQ60894.1}; TaxID=243365 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /; NBRC 12614 / NCIMB 9131 / NCTC 9757).;"
SCNpilot_expt_500_bf_scaffold_8730_2
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(682..1449)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI0003699FDD
Uncharacterized protein {ECO:0000313|EMBL:AJC46065.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8730_3

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comp(1440..1631)
DNA (192bp) protein (64aa)
Lipocalin family protein n=1 Tax=mine drainage metagenome RepID=T0ZU49_9ZZZZ
Lipocalin family protein {ECO:0000313|EMBL:EQD33425.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
blc; lipocalin; K03098 outer membrane lipoprotein Blc
SCNpilot_expt_500_bf_scaffold_8730_4

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comp(1679..1975)
DNA (297bp) protein (99aa)
Lipocalin family protein n=1 Tax=mine drainage metagenome RepID=T0ZU49_9ZZZZ
Lipocalin family protein {ECO:0000313|EMBL:EQD33425.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_expt_500_bf_scaffold_8730_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2572..2997)
DNA (426bp) protein (142aa)
Catalase-related peroxidase {ECO:0000256|PIRNR:PIRNR000296}; EC=1.11.1.- {ECO:0000256|PIRNR:PIRNR000296};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
srpA; catalase; K03781 catalase [EC:1.11.1.6]
Catalase-related peroxidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXQ7_9GAMM
SCNpilot_expt_500_bf_scaffold_8730_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3872..4393)
DNA (522bp) protein (174aa)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
phosphatidylglycerophosphatase A-like protein (EC:3.1.3.27)
Phosphatidylglycerophosphatase A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ92_9GAMM
SCNpilot_expt_500_bf_scaffold_8730_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4390..5358)
DNA (969bp) protein (323aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Thiamine-monophosphate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ93_9GAMM rbh
thiamine-phosphate kinase rbh
SCNpilot_expt_500_bf_scaffold_8730_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5389..5934)
DNA (546bp) protein (182aa)
N-acetyltransferase GCN5 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VTP1_9GAMM
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIL90582.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acetyltransferase
SCNpilot_expt_500_bf_scaffold_8730_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5934..6380)
DNA (447bp) protein (149aa)
N utilization substance protein B homolog n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ95_9GAMM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcription antitermination factor NusB
SCNpilot_expt_500_bf_scaffold_8730_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6377..6841)
DNA (465bp) protein (155aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.78)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ96_9GAMM
SCNpilot_expt_500_bf_scaffold_8730_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6838..7791)
DNA (954bp) protein (318aa)
L,D-carboxypeptidase A {ECO:0000313|EMBL:EIL90585.1}; EC=3.4.17.13 {ECO:0000313|EMBL:EIL90585.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13)
L,D-carboxypeptidase A n=1 Tax=Rhodanobacter sp. 115 RepID=I4VTP4_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_8730_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7892..8161)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJD1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99572.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_8730_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8275..9999
DNA (1725bp) protein (575aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJD2_9GAMM
SCNpilot_expt_500_bf_scaffold_8730_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9975..10478
DNA (504bp) protein (168aa)
Zinc-binding CMP/dCMP deaminase protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYP0_9GAMM rbh
Zinc-binding CMP/dCMP deaminase protein {ECO:0000313|EMBL:EIL92331.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytosine/adenosine deaminase
SCNpilot_expt_500_bf_scaffold_8730_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10475..11185
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYN9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92330.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_8730_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11312..13210
DNA (1899bp) protein (633aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Integral membrane sensor hybrid histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZG3_9GAMM rbh
signal transduction histidine kinase rbh
Displaying 16 items

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