ggKbase home page

SCNpilot_expt_500_bf_scaffold_5274

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5274_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..76)
DNA (75bp) protein (25aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:AHX12139.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_500_bf_scaffold_5274_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(379..1317)
DNA (939bp) protein (313aa)
Xylanase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4M7_9GAMM rbh
Xylanase {ECO:0000313|EMBL:EIL94418.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
esterase/lipase rbh
SCNpilot_expt_500_bf_scaffold_5274_3
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1821..2168
DNA (348bp) protein (116aa)
Regulatory protein ArsR n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3JBP7_FRASU
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ADP81067.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_500_bf_scaffold_5274_4
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2165..2659
DNA (495bp) protein (165aa)
Uncharacterized protein n=3 Tax=Amycolatopsis mediterranei RepID=G0G9F7_AMYMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK41218.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_expt_500_bf_scaffold_5274_5
unknown

Not on your lists

2656..3147
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5274_6
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3202..3687
DNA (486bp) protein (162aa)
Putative activator of Hsp90 ATPase homologue 1-like n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5WAH7_RALSL
Putative activator of Hsp90 ATPase homologue 1-like {ECO:0000313|EMBL:CCF96798.1}; TaxID=1091042 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum K60-1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5274_7
Leptospira fainei, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

3716..4156
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Leptospira fainei serovar Hurstbridge str. BUT 6 RepID=S3VEI2_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:EPG74905.1}; TaxID=1193011 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira fainei serovar Hurstbridge str. BUT 6.;"
SCNpilot_expt_500_bf_scaffold_5274_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4167..5501)
DNA (1335bp) protein (445aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9) rbh
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLZ8_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_5274_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5501..6091)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NRT9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90261.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_5274_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6042..6797)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WS93_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02335.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5274_11
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6896..8029)
DNA (1134bp) protein (378aa)
aspartate kinase (EC:4.1.1.20 2.7.2.4)
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WS92_9GAMM
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_500_bf_scaffold_5274_12
unknown

Not on your lists

8406..9623
DNA (1218bp) protein (406aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5274_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9696..10160)
DNA (465bp) protein (155aa)
hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily (EC:4.2.1.2)
Fumarate hydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSJ0_9GAMM
Fumarate hydratase {ECO:0000313|EMBL:EIM02432.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_bf_scaffold_5274_14
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10497..10835
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. H160 RepID=B5WTI4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDZ98315.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
SCNpilot_expt_500_bf_scaffold_5274_15
unknown

Not on your lists

11130..11369
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5274_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11459..13042
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031A0A58
Peptidase S53 {ECO:0000313|EMBL:AIF47104.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Peptidase S53 propeptide
SCNpilot_expt_500_bf_scaffold_5274_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13039..13272
DNA (234bp) protein (78aa)
Peptidase S53 propeptide n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC64_9GAMM
Peptidase S53 propeptide {ECO:0000313|EMBL:EIL97055.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Peptidase S53 propeptide
SCNpilot_expt_500_bf_scaffold_5274_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13374..14261
DNA (888bp) protein (296aa)
Putative phenazine biosynthesis-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4M2_9GAMM rbh
Putative phenazine biosynthesis-like protein {ECO:0000313|EMBL:EIL94413.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phenazine biosynthesis protein PhzF family rbh
SCNpilot_expt_500_bf_scaffold_5274_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14331..15659
DNA (1329bp) protein (443aa)
Amino acid transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSI8_9GAMM rbh
Amino acid transporter {ECO:0000313|EMBL:EIM02430.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
amino acid transporter
SCNpilot_expt_500_bf_scaffold_5274_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15773..16303
DNA (531bp) protein (177aa)
Isoquinoline 1-oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4L9_9GAMM
Isoquinoline 1-oxidoreductase {ECO:0000313|EMBL:EIL94410.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
SCNpilot_expt_500_bf_scaffold_5274_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16300..18483
DNA (2184bp) protein (728aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NH41_9GAMM
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein {ECO:0000313|EMBL:AGG90270.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_5274_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18516..18959)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSC2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90113.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
secondary thiamine-phosphate synthase enzyme
SCNpilot_expt_500_bf_scaffold_5274_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18956..19543)
DNA (588bp) protein (196aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5) rbh
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSC3_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_5274_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19756..20586
DNA (831bp) protein (277aa)
Putative kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ50_9GAMM rbh
putative kinase rbh
Putative kinase {ECO:0000313|EMBL:AGG88005.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_5274_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20626..20829)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSC5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90116.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5274_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20939..21280)
DNA (342bp) protein (114aa)
UPF0145 protein UUA_08141 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJJ5_9GAMM
UPF0145 protein UUA_08141 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5274_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21313..22146)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZL1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92652.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
nucleoside-diphosphate-sugar epimerase
SCNpilot_expt_500_bf_scaffold_5274_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22182..22739
DNA (558bp) protein (186aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ54_9GAMM
SCNpilot_expt_500_bf_scaffold_5274_29
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23476..23772
DNA (297bp) protein (99aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Dyella japonica RepID=UPI0002EF4569
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_5274_30
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23809..24201)
DNA (393bp) protein (131aa)
Azurin n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVZ2_9GAMM
Azurin {ECO:0000313|EMBL:EIL91383.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
azurin blue-copper protein
Displaying items 1-30 of 31 in total

View Taxonomy