ggKbase home page

SCNpilot_expt_500_bf_scaffold_3208

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3208_1
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

261..1097
DNA (837bp) protein (279aa)
Transposase Y1 Tnp domain-containing protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2EN50_9GAMM rbh
Transposase Y1 Tnp domain-containing protein {ECO:0000313|EMBL:ERJ19285.1}; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3208_2
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1472..1756)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WRA9_9GAMM
putative addiction module antidote protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_500_bf_scaffold_3208_3
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1930..3897)
DNA (1968bp) protein (656aa)
Outer membrane receptor protein n=1 Tax=Caulobacter sp. AP07 RepID=J2PZM3_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN49450.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_3208_4
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4006..4347
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HGS5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFN49449.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3208_5
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4347..5009
DNA (663bp) protein (221aa)
transcriptional regulator n=1 Tax=Rudaea cellulosilytica RepID=UPI0003800FBA rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN49448.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
DNA-binding response regulator rbh
SCNpilot_expt_500_bf_scaffold_3208_6
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5006..6352
DNA (1347bp) protein (449aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
phoQ; two-component sensor histidine kinase (EC:2.7.13.3) rbh
Two-component sensor histidine kinase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H4J1_CAUCN rbh
SCNpilot_expt_500_bf_scaffold_3208_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6568..7071)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU46_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02988.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3208_8
Cardiobacterium valvarum, Cardiobacterium, Cardiobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7762..8748
DNA (987bp) protein (329aa)
Uncharacterized protein (Fragment) n=1 Tax=Cardiobacterium valvarum F0432 RepID=G9ZJL6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EHM49684.1}; Flags: Fragment;; TaxID=797473 species="Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae; Cardiobacterium.;" source="Cardiobacterium valvarum F0432.;"
SCNpilot_expt_500_bf_scaffold_3208_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8592..9344)
DNA (753bp) protein (251aa)
DNA topoisomerase IV subunit A (EC:5.99.1.3)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA topoisomerase 4 subunit A n=1 Tax=Rhodanobacter denitrificans RepID=I4WYS7_9GAMM
SCNpilot_expt_500_bf_scaffold_3208_10
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9427..10071)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQQ3_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL95340.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_500_bf_scaffold_3208_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10085..10951)
DNA (867bp) protein (289aa)
GumN family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT1_9GAMM rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3208_12
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11025..11270)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A2135
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDZ99051.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
SCNpilot_expt_500_bf_scaffold_3208_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11331..11738)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3208_14
unknown

Not on your lists

comp(11891..12244)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3208_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12342..13460)
DNA (1119bp) protein (373aa)
Cyclopropane fatty acyl phospholipid synthase {ECO:0000313|EMBL:EIL94160.1}; EC=2.1.1.79 {ECO:0000313|EMBL:EIL94160.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Cyclopropane fatty acyl phospholipid synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT4_9GAMM rbh
methyltransferase, cyclopropane fatty acid synthase
SCNpilot_expt_500_bf_scaffold_3208_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13464..13835)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02997.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3208_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13848..14234)
DNA (387bp) protein (129aa)
Putative fluoride ion transporter CrcB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU56_9GAMM
camphor resistance protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_bf_scaffold_3208_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14445..15587)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT8_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89823.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3208_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15749..16579
DNA (831bp) protein (277aa)
Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYT9_9GAMM rbh
PEP phosphonomutase-like enzyme rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3208_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16585..17064
DNA (480bp) protein (160aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Alkylhydroperoxidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU60_9GAMM
alkylhydroperoxidase AhpD family core domain protein
SCNpilot_expt_500_bf_scaffold_3208_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17004..17579
DNA (576bp) protein (192aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Putative 3-methyladenine DNA glycosylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYU1_9GAMM
DNA-3-methyladenine glycosylase
SCNpilot_expt_500_bf_scaffold_3208_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17680..17907
DNA (228bp) protein (76aa)
Cation transport regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU62_9GAMM
Cation transport regulator {ECO:0000313|EMBL:EIM03004.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative cation transport regulator
SCNpilot_expt_500_bf_scaffold_3208_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17941..18438)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYU3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3208_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18530..18706)
DNA (177bp) protein (59aa)
Cell division topological specificity factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WYU4_9GAMM
cell division topological specificity factor MinE
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3208_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18792..19565)
DNA (774bp) protein (258aa)
Site-determining protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU65_9GAMM rbh
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
septum site-determining protein MinD
SCNpilot_expt_500_bf_scaffold_3208_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19617..20378)
DNA (762bp) protein (254aa)
Probable septum site-determining protein MinC n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3W0_9GAMM rbh
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
septum site-determining protein MinC rbh
SCNpilot_expt_500_bf_scaffold_3208_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20375..20728)
DNA (354bp) protein (118aa)
Putative acetyltransferase, GNAT superfamily protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU67_9GAMM
Putative acetyltransferase, GNAT superfamily protein {ECO:0000313|EMBL:EIM03009.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative acetyltransferase, GNAT superfamily
SCNpilot_expt_500_bf_scaffold_3208_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21100..21423
DNA (324bp) protein (108aa)
Signal transduction histidine kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU68_9GAMM
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:AGG89813.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 28 items

View Taxonomy