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SCNpilot_expt_500_bf_scaffold_3993

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3993_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..618)
DNA (618bp) protein (206aa)
2OG-Fe(II) oxygenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUM4_9GAMM
putative proline hydroxylase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3993_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(988..1395)
DNA (408bp) protein (136aa)
AAA+ family ATPase n=1 Tax=Rhodanobacter denitrificans RepID=M4NA36_9GAMM
AAA+ family ATPase
AAA+ family ATPase {ECO:0000313|EMBL:AGG87234.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3993_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2433..3539
DNA (1107bp) protein (369aa)
L-sorbosone dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU67_9GAMM rbh
glucose/sorbosone dehydrogenase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3993_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3685..4308
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU66_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90757.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phospholipid-binding protein, PBP family rbh
SCNpilot_expt_500_bf_scaffold_3993_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4413..4568
DNA (156bp) protein (52aa)
UPF0391 membrane protein UU7_14990 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU65_9GAMM
UPF0391 membrane protein UU7_14990 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Protein of unknown function (DUF1328)
SCNpilot_expt_500_bf_scaffold_3993_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4609..4971
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA39_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3993_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4979..5464
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAA0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96391.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3993_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5461..5799
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU62_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90753.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3993_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5796..6857
DNA (1062bp) protein (354aa)
Putative permease n=1 Tax=Rhodanobacter denitrificans RepID=M4NBT9_9GAMM
putative permease
Putative permease {ECO:0000313|EMBL:AGG87242.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3993_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6970..7335
DNA (366bp) protein (122aa)
Mannose-6-phosphate isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN8_9GAMM
mannose-6-phosphate isomerase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3993_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7373..7819)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUN9_9GAMM
periplasmic component of the Tol biopolymer transport system
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3993_12
unknown

Not on your lists

comp(7919..8386)
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3993_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8698..8976
DNA (279bp) protein (93aa)
type I restriction enzyme methyltransferase subunit; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Type I restriction enzyme methyltransferase subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKJ4_9GAMM
Type I restriction enzyme methyltransferase subunit {ECO:0000313|EMBL:EIL99985.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_bf_scaffold_3993_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8989..9210
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA47_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87254.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3993_15
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9225..10259)
DNA (1035bp) protein (345aa)
Zinc-binding dehydrogenase family oxidoreductase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UJQ3_MYXSD rbh
Uncharacterized protein {ECO:0000313|EMBL:AJW43995.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
zinc-binding dehydrogenase family oxidoreductase rbh
SCNpilot_expt_500_bf_scaffold_3993_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10289..11035)
DNA (747bp) protein (249aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter denitrificans RepID=I4WUQ0_9GAMM rbh
short-chain dehydrogenase of unknown substrate specificity rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87255.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3993_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11032..12474)
DNA (1443bp) protein (481aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Rhodanobacter denitrificans RepID=M4NHE8_9GAMM rbh
efflux transporter, outer membrane factor lipoprotein, NodT family rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:AGG87256.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3993_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12474..13313)
DNA (840bp) protein (280aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU44_9GAMM
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter {ECO:0000313|EMBL:EIL90735.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
SCNpilot_expt_500_bf_scaffold_3993_19
unknown

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13538..13951
DNA (414bp) protein (138aa)

This feature has no annotations

Displaying 19 items

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