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SCNpilot_expt_500_bf_scaffold_4213

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4213_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1434
DNA (1434bp) protein (478aa)
Oar protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1W5_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:AHX15752.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
outer membrane receptor protein
SCNpilot_expt_500_bf_scaffold_4213_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1556..2833
DNA (1278bp) protein (426aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Diaminopimelate decarboxylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WW35_9GAMM rbh
diaminopimelate decarboxylase rbh
SCNpilot_expt_500_bf_scaffold_4213_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2830..4044
DNA (1215bp) protein (405aa)
Membrane dipeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WW36_9GAMM rbh
Zn-dependent dipeptidase, microsomal dipeptidase rbh
Zn-dependent dipeptidase, microsomal dipeptidase {ECO:0000313|EMBL:AGG90476.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4213_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4028..5602
DNA (1575bp) protein (525aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Rhodanobacter denitrificans RepID=M4NK90_9GAMM rbh
penicillin-binding protein, beta-lactamase class C rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_4213_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5599..6591
DNA (993bp) protein (331aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peptidase M15D vanX D-ala-D-ala dipeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN80_9GAMM rbh
D-Ala-D-Ala dipeptidase vanX rbh
SCNpilot_expt_500_bf_scaffold_4213_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6591..7496
DNA (906bp) protein (302aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Rhodanobacter denitrificans RepID=M4NHX3_9GAMM rbh
penicillin-binding protein, beta-lactamase class C rbh
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:AGG90479.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4213_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7577..8338
DNA (762bp) protein (254aa)
Negative regulator of beta-lactamase expression n=1 Tax=Rhodanobacter denitrificans RepID=M4NHS9_9GAMM rbh
negative regulator of beta-lactamase expression rbh
Negative regulator of beta-lactamase expression {ECO:0000313|EMBL:AGG90480.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4213_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8462..9616)
DNA (1155bp) protein (385aa)
Heavy metal efflux pump CzcA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUI8_9GAMM
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:EIL90879.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heavy metal efflux pump, cobalt-zinc-cadmium
SCNpilot_expt_500_bf_scaffold_4213_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9691..11163)
DNA (1473bp) protein (491aa)
Heavy metal efflux pump CzcA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUI8_9GAMM
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:EIL90879.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heavy metal efflux pump, cobalt-zinc-cadmium
SCNpilot_expt_500_bf_scaffold_4213_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11479..11676)
DNA (198bp) protein (66aa)
RND family efflux transporter, MFP subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NK94_9GAMM
RND transporter {ECO:0000313|EMBL:AHX15228.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
RND family efflux transporter, MFP subunit
Displaying 10 items

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