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SCNpilot_expt_500_bf_scaffold_7648

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_7648_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..484)
DNA (483bp) protein (161aa)
Cytidylate kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY2_9GAMM
cytidylate kinase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_7648_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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589..846
DNA (258bp) protein (86aa)
Acyl-CoA-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6W2_9GAMM
acyl-CoA-binding protein
Acyl-CoA-binding protein {ECO:0000313|EMBL:EIL95203.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_7648_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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928..2946
DNA (2019bp) protein (673aa)
NADH:flavin oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6W1_9GAMM
NADH:flavin oxidoreductase {ECO:0000313|EMBL:EIL95202.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NADH:flavin oxidoreductase rbh
SCNpilot_expt_500_bf_scaffold_7648_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3178..4089
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WXJ1_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_7648_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4436..4912)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI9_9GAMM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_7648_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4909..7257)
DNA (2349bp) protein (783aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI8_9GAMM
carbamoyl-phosphate synthase, large subunit
SCNpilot_expt_500_bf_scaffold_7648_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7215..8012)
DNA (798bp) protein (266aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI92_9GAMM
carbamoyl-phosphate synthase, large subunit
SCNpilot_expt_500_bf_scaffold_7648_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8009..9139)
DNA (1131bp) protein (377aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI7_9GAMM
carbamoyl-phosphate synthase small subunit
SCNpilot_expt_500_bf_scaffold_7648_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9355..10050
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6V5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95196.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_7648_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10088..10879)
DNA (792bp) protein (264aa)
dihydrodipicolinate reductase (EC:1.3.1.26) rbh
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Rhodanobacter denitrificans RepID=M4NH27_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_7648_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10962..12089)
DNA (1128bp) protein (376aa)
Chaperone protein DnaJ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI87_9GAMM rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chaperone protein DnaJ rbh
SCNpilot_expt_500_bf_scaffold_7648_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12150..13409)
DNA (1260bp) protein (420aa)
Chaperone protein DnaK n=1 Tax=Rhodanobacter denitrificans RepID=I4WXI3_9GAMM
chaperone protein DnaK
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 12 items

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