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SCNpilot_expt_500_bf_scaffold_3363_31

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(27870..28385)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK27_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 77.7
  • Coverage: 184.0
  • Bit_score: 281
  • Evalue 6.40e-73
RNA polymerase sigma factor {ECO:0000313|EMBL:EIL99818.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.7
  • Coverage: 184.0
  • Bit_score: 281
  • Evalue 9.00e-73
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 61.2
  • Coverage: 183.0
  • Bit_score: 207
  • Evalue 4.80e-51

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 516
ATGGATGCCCTGGTCGACCCCGATGCGATGCTGATGCTGGCCTACGCGCGCGGCGATCTTGCCGCGTTCGAGGCGCTGTACGGCCTGCGCGATCCCCAGCGCACCGACGAGCTGTTCCAGGAAACCTGGAGCCGGGTGATCGCCGCCCGCGCGCGCTACCAGCCGCAAGCAAAGTTCAGTACCTGGCTGCTGCAGATCGCGCACAACCTTCTGGTCGATGCGCTGCGCCGCCAGCGCCCCACCGCCGACGGCGAGGAAGCCGAACTGGCGCTGTCCCGCGTCGCCATCCCCGAACACGAGCAACCCGAGCACGCCTGGTCCGATTTCGAGCGCCGCCGCCATCTGCAGCGCGCGATCGAGCAGTTGCCCGACGAGCAACGCACCGCCATCCTGTTGCGGCTGGAGCAGGAGCTGAGCCTGGAGGAGATCGCCGAAGTGACCGGCAGCGGCCGCGAGACCGTGAAGTCGCGCCTGCGCTATGCCATGACCCGCCTACGTGAAGCGCTGTCCGAATGA
PROTEIN sequence
Length: 172
MDALVDPDAMLMLAYARGDLAAFEALYGLRDPQRTDELFQETWSRVIAARARYQPQAKFSTWLLQIAHNLLVDALRRQRPTADGEEAELALSRVAIPEHEQPEHAWSDFERRRHLQRAIEQLPDEQRTAILLRLEQELSLEEIAEVTGSGRETVKSRLRYAMTRLREALSE*