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SCNpilot_expt_500_bf_scaffold_3363

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3363_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..446
DNA (444bp) protein (148aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR79_9GAMM
diguanylate cyclase (GGDEF) domain-containing protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3363_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

562..1185
DNA (624bp) protein (208aa)
RNA polymerase sigma factor RpoE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL3_9GAMM rbh
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EIM01405.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RNA polymerase, sigma-24 subunit, RpoE rbh
SCNpilot_expt_500_bf_scaffold_3363_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1182..1841
DNA (660bp) protein (220aa)
Negative regulator of sigma E activity n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL4_9GAMM
negative regulator of sigma E activity
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3363_4
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1778..2908)
DNA (1131bp) protein (377aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JVH9_BURP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA49128.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1710b).;"
SCNpilot_expt_500_bf_scaffold_3363_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2970..3404
DNA (435bp) protein (145aa)
Periplasmic serine protease, Do/DeqQ family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Q4_9GAMM
periplasmic serine protease, Do/DeqQ family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3363_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3581..5245
DNA (1665bp) protein (555aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Elongation factor 4 n=1 Tax=Rhodanobacter denitrificans RepID=I4WR83_9GAMM
GTP-binding protein LepA
SCNpilot_expt_500_bf_scaffold_3363_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5351..6184
DNA (834bp) protein (278aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Rhodanobacter sp. 115 RepID=I4VM51_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3363_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6686..7345
DNA (660bp) protein (220aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ribonuclease III (EC:3.1.26.3) rbh
Ribonuclease 3 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL9_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3363_9
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7424..8260
DNA (837bp) protein (279aa)
GTP-binding protein Era n=1 Tax=Dyella ginsengisoli RepID=UPI00034D165F
GTP-binding protein Era
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_500_bf_scaffold_3363_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8387..9136
DNA (750bp) protein (250aa)
DNA repair protein RecO n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPM1_9GAMM rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA replication and repair protein RecO rbh
SCNpilot_expt_500_bf_scaffold_3363_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9307..10059)
DNA (753bp) protein (251aa)
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR89_9GAMM
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EIM01414.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative two-component hybrid sensor and regulator
SCNpilot_expt_500_bf_scaffold_3363_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10084..12078
DNA (1995bp) protein (665aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEV5_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89339.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3363_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12176..12784
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR91_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG89338.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3363_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12933..14270
DNA (1338bp) protein (446aa)
23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-) rbh
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Rhodanobacter denitrificans RepID=M4NGW6_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3363_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14385..14906
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6R5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95156.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3363_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14900..15913
DNA (1014bp) protein (338aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Beta-hexosaminidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6R6_9GAMM rbh
beta-glucosidase-like glycosyl hydrolase rbh
SCNpilot_expt_500_bf_scaffold_3363_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15910..16473
DNA (564bp) protein (188aa)
Hypoxanthine-guanine phosphoribosyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6R7_9GAMM rbh
hypoxanthine-guanine phosphoribosyltransferase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3363_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16617..17378
DNA (762bp) protein (254aa)
purine nucleoside phosphorylase (EC:2.4.2.28) rbh
Probable S-methyl-5'-thioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Purine nucleoside phosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR96_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3363_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17530..17694
DNA (165bp) protein (55aa)
Cold shock protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPN0_9GAMM
Cold shock protein {ECO:0000313|EMBL:EIM01422.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cold shock protein
SCNpilot_expt_500_bf_scaffold_3363_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17917..18822
DNA (906bp) protein (302aa)
Putative reductase R2APBS1_2220 {ECO:0000256|HAMAP-Rule:MF_01838}; EC=1.3.1.- {ECO:0000256|HAMAP-Rule:MF_01838};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Putative reductase UUC_09943 n=1 Tax=Rhodanobacter denitrificans RepID=I4WRA0_9GAMM rbh
putative paraquat-inducible protein B rbh
SCNpilot_expt_500_bf_scaffold_3363_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18764..19084
DNA (321bp) protein (107aa)
Putative reductase UUA_05142 {ECO:0000256|HAMAP-Rule:MF_01838}; EC=1.3.1.- {ECO:0000256|HAMAP-Rule:MF_01838};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Putative reductase UUA_05142 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP46_9GAMM
putative paraquat-inducible protein B
SCNpilot_expt_500_bf_scaffold_3363_22
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19111..19728
DNA (618bp) protein (206aa)
cell division protein Fic n=1 Tax=Nevskia ramosa RepID=UPI0003B6083D
NODE_47, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97324.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
fic_[C]; Fic family putative cell filamentation protein
SCNpilot_expt_500_bf_scaffold_3363_23
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19735..19932)
DNA (198bp) protein (66aa)
NODE_47, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97323.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
SCNpilot_expt_500_bf_scaffold_3363_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20097..20594)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NI21_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89318.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3363_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20872..22371)
DNA (1500bp) protein (500aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
catalase (EC:1.11.1.6); K03781 catalase [EC:1.11.1.6] rbh
Catalase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z6_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3363_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22587..23639
DNA (1053bp) protein (351aa)
alcohol dehydrogenase; K13979 uncharacterized zinc-type alcohol dehydrogenase-like protein [EC:1.-.-.-]
Alcohol dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z7_9GAMM rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:EIL95238.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_3363_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23712..24266)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95239.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3363_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25340..25759
DNA (420bp) protein (140aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG09422.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
id=2702838 bin=GWF1_Xanthomonadales_69_6 species=Brucella abortus genus=Brucella taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_expt_500_bf_scaffold_3363_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26387..27025)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W701_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95242.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3363_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26980..27873)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W702_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95243.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
Displaying items 1-30 of 34 in total

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