ggKbase home page

SCNpilot_expt_500_bf_scaffold_5880_25

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(23849..24082)

Top 3 Functional Annotations

Value Algorithm Source
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBZ8_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 70.1
  • Coverage: 77.0
  • Bit_score: 105
  • Evalue 2.20e-20
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EIL96989.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.1
  • Coverage: 77.0
  • Bit_score: 105
  • Evalue 3.10e-20
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 64.9
  • Coverage: 74.0
  • Bit_score: 97
  • Evalue 1.90e-18

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 234
GTGTTCGTGCGCGACGTGATCGGCGACGCCGACACCGCCACCATCACCGGCGCGATCATCGCCATGGCCCAGCGGCTGGACAAGCTGGTGGTCGCCGAAGGGGTGGAGACGGACGCGCAAGCCGCGTTCCTGCGCCAGGCCGGCTGCGCCGAACTGCAGGGCTTCCTGTTCGCCGCGGCACTGCCGGTCGCCGACTTCGAAAAGCTACTGACCGAACCCGCCCGCGCGACGTAG
PROTEIN sequence
Length: 78
VFVRDVIGDADTATITGAIIAMAQRLDKLVVAEGVETDAQAAFLRQAGCAELQGFLFAAALPVADFEKLLTEPARAT*