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SCNpilot_expt_500_bf_scaffold_374

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_374_1
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)
Uncharacterized protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2FRT0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK56969.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_374_2
unknown

Not on your lists

comp(152..487)
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_374_3
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(603..1667)
DNA (1065bp) protein (355aa)
Uncharacterized protein {ECO:0000313|EMBL:CDT07113.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
SCNpilot_expt_500_bf_scaffold_374_4
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1674..2123)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNT7_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:CDT07106.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_374_5
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2724..4286
DNA (1563bp) protein (521aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC89217.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
SCNpilot_expt_500_bf_scaffold_374_6
unknown

Not on your lists

4331..5641
DNA (1311bp) protein (437aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_374_7
unknown

Not on your lists

5652..6188
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_374_8
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6221..9910
DNA (3690bp) protein (1230aa)
hypothetical protein n=1 Tax=Psychroflexus tropicus RepID=UPI00035EACE9
Contig41, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77242.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
Rhs family protein
SCNpilot_expt_500_bf_scaffold_374_9
unknown

Not on your lists

9915..10148
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_374_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10135..14265
DNA (4131bp) protein (1377aa)
RHS repeat-associated core domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDE8_NIAKG
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AEV99388.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_374_11
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14276..14659
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:EOA53684.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
SCNpilot_expt_500_bf_scaffold_374_12
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15001..15804)
DNA (804bp) protein (268aa)
RteC protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNT6_SOLCM
Putative RteC protein {ECO:0000313|EMBL:CDT07019.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
RteC protein
SCNpilot_expt_500_bf_scaffold_374_13
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16413..19184
DNA (2772bp) protein (924aa)
lantibiotic dehydratase n=1 Tax=Pedobacter agri RepID=UPI00029A7031 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIA96701.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
lantibiotic dehydratase rbh
SCNpilot_expt_500_bf_scaffold_374_14
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19177..19905)
DNA (729bp) protein (243aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2F0Q2_EMTOG
two component transcriptional regulator, LytTR family
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AFK05505.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
SCNpilot_expt_500_bf_scaffold_374_15
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19902..21032)
DNA (1131bp) protein (377aa)
Signal transduction histidine kinase, LytS n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBI1_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:AKD04293.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
signal transduction histidine kinase LytS
SCNpilot_expt_500_bf_scaffold_374_16
unknown

Not on your lists

21079..21228
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_374_17
unknown

Not on your lists

21498..21812
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_374_18
unknown

Not on your lists

22002..22319
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_374_19
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22367..23887)
DNA (1521bp) protein (507aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FYD3_ECHVK
thiol-disulfide isomerase-like thioredoxin
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:AGA77645.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
SCNpilot_expt_500_bf_scaffold_374_20
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23862..25241)
DNA (1380bp) protein (460aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y400_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30945.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
RagB/SusD family protein
SCNpilot_expt_500_bf_scaffold_374_21
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25245..28787)
DNA (3543bp) protein (1181aa)
TonB-dependent receptor n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y3Z9_9SPHI
TonB-dependent receptor {ECO:0000313|EMBL:EHQ30944.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SusC/RagA family TonB-linked outer membrane protein
SCNpilot_expt_500_bf_scaffold_374_22
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28991..30157)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HUZ5_9SPHI
Putative FecR protein {ECO:0000313|EMBL:CDS92078.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
FecR protein
SCNpilot_expt_500_bf_scaffold_374_23
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30326..30916)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J9K0_9SPHI
Putative RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDS92079.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
RNA polymerase sigma-70 factor
SCNpilot_expt_500_bf_scaffold_374_24
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30929..31324)
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:CDS92080.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
SCNpilot_expt_500_bf_scaffold_374_25
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31538..32536
DNA (999bp) protein (333aa)
LytTr DNA-binding region n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDW5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:CDS92081.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
LytTr DNA-binding protein
SCNpilot_expt_500_bf_scaffold_374_26
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32583..32966)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FWG2_ECHVK
Uncharacterized protein {ECO:0000313|EMBL:CDS92082.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_374_27
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33050..33907
DNA (858bp) protein (286aa)
Response regulator of the LytR/AlgR family n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FYU0_ECHVK
Putative LytTr DNA-binding region {ECO:0000313|EMBL:CDS92083.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
response regulator of the LytR/AlgR family
SCNpilot_expt_500_bf_scaffold_374_28
unknown

Not on your lists

34082..34663
DNA (582bp) protein (194aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_374_29
unknown

Not on your lists

34689..35105
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NZW8_9SPHI
SCNpilot_expt_500_bf_scaffold_374_30
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

35154..35561
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0PPR8_ELIME
Uncharacterized protein {ECO:0000313|EMBL:AJW65350.1}; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
Displaying items 1-30 of 72 in total

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