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SCNpilot_expt_500_bf_scaffold_385

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_385_1
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..1034)
DNA (1032bp) protein (344aa)
Uncharacterized protein {ECO:0000313|EMBL:BAP30294.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
SCNpilot_expt_500_bf_scaffold_385_2
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1046..2935)
DNA (1890bp) protein (630aa)
Rhs element Vgr protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VXG8_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:BAP30291.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_385_3
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3249..3656)
DNA (408bp) protein (136aa)
Uncharacterized protein n=2 Tax=Myroides RepID=K1HRB6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF13026.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_385_4
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3970..4617)
DNA (648bp) protein (216aa)
Uncharacterized protein {ECO:0000313|EMBL:KGO93539.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
SCNpilot_expt_500_bf_scaffold_385_5
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

4709..6043
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B3F7B4
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
SCNpilot_expt_500_bf_scaffold_385_6
unknown

Not on your lists

comp(6040..6402)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_385_7
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(6415..6903)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9DMU2_9FLAO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCNpilot_expt_500_bf_scaffold_385_8
unknown

Not on your lists

comp(6893..7327)
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_385_9
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7388..7687)
DNA (300bp) protein (100aa)
transcriptional regulator n=1 Tax=Segetibacter koreensis RepID=UPI00037342A0
Putative DNA-binding protein {ECO:0000313|EMBL:GAO41703.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_385_10
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

comp(7684..8304)
DNA (621bp) protein (207aa)
Putative uncharacterized protein id=1889866 bin=GWE2_Bacteroidetes_40_15 species=Gillisia limnaea genus=Gillisia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
SCNpilot_expt_500_bf_scaffold_385_11
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8763..9341
DNA (579bp) protein (193aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KUQ6_HALH1
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEE53459.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_500_bf_scaffold_385_12
unknown

Not on your lists

9353..11218
DNA (1866bp) protein (622aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_385_13
Chryseobacterium luteum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11349..13214
DNA (1866bp) protein (622aa)
Endonuclease I n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X4H7_FLAB3 rbh
Endonuclease I {ECO:0000313|EMBL:KFF02164.1}; TaxID=421531 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium luteum.;"
endonuclease I rbh
SCNpilot_expt_500_bf_scaffold_385_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13309..15927)
DNA (2619bp) protein (873aa)
molecular chaperone ClpB n=1 Tax=Segetibacter koreensis RepID=UPI00035EE016
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_385_15
Chryseobacterium antarcticum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16125..17621
DNA (1497bp) protein (499aa)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=266748 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium antarcticum.;"
phospholipase D/transphosphatidylase; K06131 cardiolipin synthase [EC:2.7.8.-] rbh
Cardiolipin synthase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XT94_PEDHD rbh
SCNpilot_expt_500_bf_scaffold_385_16
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17680..18147
DNA (468bp) protein (156aa)
peroxiredoxin Bcp; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Peroxiredoxin Bcp n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BD00_ZUNPS
Peroxiredoxin Bcp {ECO:0000313|EMBL:ADF52680.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
SCNpilot_expt_500_bf_scaffold_385_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18219..18971
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH08_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00619.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_385_18
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19049..19717)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HY44_9SPHI
Copper homeostasis protein {ECO:0000313|EMBL:KFC59800.1}; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
CutC family protein; K06201 copper homeostasis protein
SCNpilot_expt_500_bf_scaffold_385_19
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19720..20718)
DNA (999bp) protein (333aa)
Asparaginase 2 (EC:3.5.1.1); K01444 N4-(beta-N-acetylglucosaminyl)-L-asparaginase [EC:3.5.1.26] rbh
Twin-arginine translocation pathway signal id=2720393 bin=GWF1_Flavobacteria_32_7 species=Flavobacteria bacterium BAL38 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes rbh
Tax=GWF1_Flavobacteria_32_7_curated
SCNpilot_expt_500_bf_scaffold_385_20
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20998..21327
DNA (330bp) protein (110aa)
Putative prophage repressor n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FAM2_FLAJ1
prophage repressor
Putative prophage repressor {ECO:0000313|EMBL:ABQ07742.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
SCNpilot_expt_500_bf_scaffold_385_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21503..23188)
DNA (1686bp) protein (562aa)
PHP domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PCF6_CHIPD
PHP domain-containing protein; K02347 DNA polymerase (family X)
Histidinol phosphatase {ECO:0000313|EMBL:KIC91338.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
SCNpilot_expt_500_bf_scaffold_385_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23290..24516
DNA (1227bp) protein (409aa)
Glucose sorbosone dehydrogenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHS4_CHIPD rbh
glucose sorbosone dehydrogenase rbh
Glucose sorbosone dehydrogenase {ECO:0000313|EMBL:ACU60010.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_385_23
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24664..25614
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000376C682
Uncharacterized protein {ECO:0000313|EMBL:GAO31360.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
SCNpilot_expt_500_bf_scaffold_385_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

25635..27281
DNA (1647bp) protein (549aa)
glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036ACF56
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_385_25
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

27610..28551
DNA (942bp) protein (314aa)
phenylacetate-CoA oxygenase subunit PaaG; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] rbh
phenylacetate-CoA oxygenase subunit PaaA n=1 Tax=Lewinella cohaerens RepID=UPI00035D2038 rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_385_26
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28804..30309
DNA (1506bp) protein (502aa)
Probable malate:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00212}; EC=1.1.5.4 {ECO:0000256|HAMAP-Rule:MF_00212};; MQO {ECO:0000256|HAMAP-Rule:MF_00212}; Malate dehydrogenase [quinone] {ECO:0000256|HAMAP-Rule:MF_00212}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
malate:quinone oxidoreductase; K00116 malate dehydrogenase (quinone) [EC:1.1.5.4]
Probable malate:quinone oxidoreductase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJY6_9SPHI
SCNpilot_expt_500_bf_scaffold_385_27
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

30424..31443
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK93_NIAKG
hypothetical protein
Tax=BJP_IG2102_Bacteroidetes_40_9
SCNpilot_expt_500_bf_scaffold_385_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31542..32132
DNA (591bp) protein (197aa)
Holliday junction DNA helicase subunit RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9Y2_NIAKG
SCNpilot_expt_500_bf_scaffold_385_29
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34240..39624
DNA (5385bp) protein (1795aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRA8_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64347.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_385_30
unknown

Not on your lists

39638..39979
DNA (342bp) protein (114aa)

This feature has no annotations

Displaying items 1-30 of 40 in total

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