ggKbase home page

SCNpilot_expt_500_bf_scaffold_427

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_427_1
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..1406
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00036691CF
Uncharacterized protein {ECO:0000313|EMBL:KFF19999.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_2
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2434..3423
DNA (990bp) protein (330aa)
DNA topoisomerase iii (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase n=1 Tax=Empedobacter brevis RepID=UPI00037733F4
DNA topoisomerase III {ECO:0000313|EMBL:GAE65851.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
SCNpilot_expt_500_bf_scaffold_427_3
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3683..4966)
DNA (1284bp) protein (428aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q24RY4_DESHY rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAE85208.1}; TaxID=138119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain Y51).;"
SCNpilot_expt_500_bf_scaffold_427_4
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5240..5674
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00036BC6CC
Uncharacterized protein {ECO:0000313|EMBL:KGO11339.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_5
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5664..11105
DNA (5442bp) protein (1814aa)
DNA methylase n=1 Tax=Empedobacter brevis RepID=UPI00037BA93E
DNA methylase {ECO:0000313|EMBL:KEQ31131.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
N-6 DNA methylase
SCNpilot_expt_500_bf_scaffold_427_6
unknown

Not on your lists

comp(11258..11734)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_427_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12020..14023)
DNA (2004bp) protein (668aa)
TraG family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VT55_9SPHI
TraG family protein {ECO:0000313|EMBL:EFK56956.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_8
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14227..14931
DNA (705bp) protein (235aa)
Molecular chaperone Hsp31 and glyoxalase 3 {ECO:0000313|EMBL:AJW62560.1}; EC=4.2.1.130 {ECO:0000313|EMBL:AJW62560.1};; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00036283D2
ThiJ/PfpI domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_427_9
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14934..15866
DNA (933bp) protein (311aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZ54_PEDHD rbh
NAD-dependent epimerase/dehydratase rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACU02536.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_500_bf_scaffold_427_10
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15889..16824
DNA (936bp) protein (312aa)
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZ55_PEDHD rbh
AraC family transcriptional regulator rbh
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ACU02537.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_500_bf_scaffold_427_11
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16893..17378)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VS63_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK56614.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_12
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17380..18420)
DNA (1041bp) protein (347aa)
membrane protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036621FE rbh
Membrane protein {ECO:0000313|EMBL:KIC62900.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
peptidase S15; K06889 rbh
SCNpilot_expt_500_bf_scaffold_427_13
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18433..18933)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2JLT6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL61968.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_14
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18933..19502)
DNA (570bp) protein (190aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G284_9SPHI rbh
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EEI90774.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
maltose O-acetyltransferase
SCNpilot_expt_500_bf_scaffold_427_15
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19609..20130)
DNA (522bp) protein (174aa)
Acetyltransferase n=1 Tax=Flavobacterium sp. CF136 RepID=J2SNL1_9FLAO
Acetyltransferase {ECO:0000313|EMBL:EJL67067.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
GCN5-related N-acetyltransferase
SCNpilot_expt_500_bf_scaffold_427_16
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20133..20963)
DNA (831bp) protein (277aa)
Transcriptional regulator, AraC family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G285_9SPHI rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEI90775.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_427_17
Robiginitalea biformata, Robiginitalea, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21146..21574)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) RepID=A4CN48_ROBBH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAR15090.1}; TaxID=313596 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Robiginitalea.;" source="Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146).;"
SCNpilot_expt_500_bf_scaffold_427_18
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21827..22426
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CIS0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF15592.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. JM1.;"
SCNpilot_expt_500_bf_scaffold_427_19
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22437..23726)
DNA (1290bp) protein (430aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZX4_9FLAO
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EFK33904.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
relaxase/mobilization nuclease family protein
SCNpilot_expt_500_bf_scaffold_427_20
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23728..24165)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZX5_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF00708.1}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium formosense.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_21
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24907..25674
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0M8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK34027.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
chromosome partitioning ATPase
SCNpilot_expt_500_bf_scaffold_427_22
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25679..26119
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VT46_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK56947.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_23
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26125..26397
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00035FB386
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA79453.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
SCNpilot_expt_500_bf_scaffold_427_24
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

26409..27044
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0N0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE64144.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_25
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27106..28176
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G237_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM38393.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_26
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28255..28581
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8D1_SPHS2
hypothetical protein; K09946 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ80205.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_500_bf_scaffold_427_27
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28869..29174
DNA (306bp) protein (102aa)
Uncharacterized protein n=3 Tax=Bacteroidetes RepID=F0S619_PEDSD
Conjugal transfer protein {ECO:0000313|EMBL:KGO11316.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_427_28
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29191..30024
DNA (834bp) protein (278aa)
D12 class N6 adenine-specific DNA methyltransferase; K06223 DNA adenine methylase [EC:2.1.1.72] rbh
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MMQ0_9SPHI rbh
D12 class N6 adenine-specific DNA methyltransferase {ECO:0000313|EMBL:EFK36112.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
SCNpilot_expt_500_bf_scaffold_427_29
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30011..30343
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5U6_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ80111.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_500_bf_scaffold_427_30
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

30340..32733
DNA (2394bp) protein (798aa)
Conjugation system ATPase, TraG family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZY9_9FLAO
Conjugation system ATPase, TraG family {ECO:0000313|EMBL:EFK33919.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
type iv secretory pathway virb4 components-like protein
Displaying 30 items

View Taxonomy