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SCNpilot_expt_500_bf_scaffold_550

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_550_1
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..731
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003714741
Putative Conjugative transposon TraN protein {ECO:0000313|EMBL:CDT07219.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
Bacteroides conjugative transposon TraN protein
SCNpilot_expt_500_bf_scaffold_550_2
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

749..1591
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FE18_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:CDT15647.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_550_3
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1637..1981
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:CDT15647.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
SCNpilot_expt_500_bf_scaffold_550_4
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2013..2564
DNA (552bp) protein (184aa)
Uncharacterized protein {ECO:0000313|EMBL:CDT15638.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
SCNpilot_expt_500_bf_scaffold_550_5
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2521..2895
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:CDT15628.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
SCNpilot_expt_500_bf_scaffold_550_6
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2855..3133
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00035CA487
Uncharacterized protein {ECO:0000313|EMBL:CDT15618.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_550_7
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3120..3329
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:CDT15610.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
SCNpilot_expt_500_bf_scaffold_550_8
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3354..4601)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens NCIMB 11764 RepID=U7DNR3_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:KIX21586.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_550_9
unknown

Not on your lists

4886..5005
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_550_10
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5080..6249
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NY20_9SPHI rbh
Transposase {ECO:0000313|EMBL:AIM38679.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
transposase IS4 family protein rbh
SCNpilot_expt_500_bf_scaffold_550_11
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6466..8376
DNA (1911bp) protein (637aa)
Uncharacterized protein n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UR47_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:KIX21585.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_550_12
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8707..9579
DNA (873bp) protein (291aa)
Uncharacterized protein {ECO:0000313|EMBL:KEO72243.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
Uncharacterized protein id=4161304 bin=GWF2_Bacteroidetes_29_10 species=unknown genus=Cycloclasticus taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes rbh
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_550_13
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9557..10126
DNA (570bp) protein (190aa)
Membrane protein {ECO:0000313|EMBL:KEO72242.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
Putative uncharacterized protein id=1882208 bin=GWE2_Bacteroidetes_29_8 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE2_Bacteroidetes_29_8 organism_group=Bacteroidetes organism_desc=Good
hypothetical protein
SCNpilot_expt_500_bf_scaffold_550_14
unknown

Not on your lists

10799..11191
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_550_15
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11387..14497)
DNA (3111bp) protein (1037aa)
Probable heavy metal efflux pump, CzcA family n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XUI0_FLAIG
Probable heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:CCG52963.1}; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
heavy metal efflux pump, CzcA family
SCNpilot_expt_500_bf_scaffold_550_16
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14660..16042)
DNA (1383bp) protein (461aa)
Magnesium transporter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6P7_NIAKG rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
magnesium transporter; K06213 magnesium transporter rbh
SCNpilot_expt_500_bf_scaffold_550_17
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16054..17058)
DNA (1005bp) protein (335aa)
Probable membrane fusion efflux lipoprotein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XUI2_FLAIG
membrane fusion efflux lipoprotein precursor
Probable membrane fusion efflux lipoprotein {ECO:0000313|EMBL:CCG52965.1}; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
SCNpilot_expt_500_bf_scaffold_550_18
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17058..18317)
DNA (1260bp) protein (420aa)
Outer membrane efflux protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XUZ6_FLAIG
Outer membrane efflux protein precursor; K15725 cobalt-zinc-cadmium resistance protein CzcC
Outer membrane efflux protein {ECO:0000313|EMBL:CCG52966.1}; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
SCNpilot_expt_500_bf_scaffold_550_19
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18413..19780)
DNA (1368bp) protein (456aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCG52967.1};; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
Two-component system sensor histidine kinase n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XUZ7_FLAIG
SCNpilot_expt_500_bf_scaffold_550_20
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19780..20460)
DNA (681bp) protein (227aa)
Probable two-component system response regulatory protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XUZ8_FLAIG
two-component system response regulatory protein; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
Probable two-component system response regulatory protein {ECO:0000313|EMBL:CCG52968.1}; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
SCNpilot_expt_500_bf_scaffold_550_21
unknown

Not on your lists

comp(20605..20781)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_550_22
unknown

Not on your lists

20805..21302
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_550_23
unknown

Not on your lists

21268..21594
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_550_24
unknown

Not on your lists

comp(21533..22036)
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_550_25
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23197..23472)
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:GAE63400.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
Displaying 25 items

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