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SCNpilot_expt_500_bf_scaffold_601

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_601_1
unknown

Not on your lists

2..82
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_601_2
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

239..652
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00036A867D
Peptide chain release factor 1 {ECO:0000313|EMBL:KFC20063.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
class I peptide chain release factor; K15034 ribosome-associated protein
SCNpilot_expt_500_bf_scaffold_601_3
unknown

Not on your lists

comp(714..1271)
DNA (558bp) protein (186aa)
hypothetical protein
SCNpilot_expt_500_bf_scaffold_601_4
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1284..3611)
DNA (2328bp) protein (776aa)
TonB-dependent receptor n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CEZ9_SPHS2 rbh
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor {ECO:0000313|EMBL:ADZ79100.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_500_bf_scaffold_601_5
unknown

Not on your lists

comp(3709..4059)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_601_6
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4126..4806)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI00035CD8F9
Uncharacterized protein {ECO:0000313|EMBL:AHM59266.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
SCNpilot_expt_500_bf_scaffold_601_7
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4932..5633
DNA (702bp) protein (234aa)
3'-5' exonuclease, PolB n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TUU4_MARTH
3'-5' exonuclease, polb; K07501 hypothetical protein
3'-5' exonuclease, PolB {ECO:0000313|EMBL:ADR21049.1}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
SCNpilot_expt_500_bf_scaffold_601_8
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5638..6753)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000361168B
Permease {ECO:0000313|EMBL:KGO87584.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_601_9
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6773..7825)
DNA (1053bp) protein (351aa)
histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Histidine kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP24_CHIPD
SCNpilot_expt_500_bf_scaffold_601_10
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7875..8999)
DNA (1125bp) protein (375aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS04844.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
Uncharacterized protein id=5023612 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes rbh
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_601_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9273..11255
DNA (1983bp) protein (661aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMK0_NIAKG
SCNpilot_expt_500_bf_scaffold_601_12
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

11404..12180
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003694674
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_expt_500_bf_scaffold_601_13
unknown

Not on your lists

comp(12251..12886)
DNA (636bp) protein (212aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_601_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12998..13750)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B4FA1
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAO44812.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein; K02066 putative ABC transport system permease protein
SCNpilot_expt_500_bf_scaffold_601_15
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13927..14613
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG50_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58033.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_601_16
unknown

Not on your lists

14627..14791
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_601_17
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14715..16001)
DNA (1287bp) protein (429aa)
Peptidase M16 domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIL4_CHIPD
peptidase M16 domain-containing protein
Peptidase M16 domain protein {ECO:0000313|EMBL:ACU58203.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_601_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

16121..16888
DNA (768bp) protein (256aa)
phosphosulfolactate synthase; K08097 phosphosulfolactate synthase [EC:4.4.1.19]
Phosphosulfolactate synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNN3_NIAKG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_601_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16901..17827
DNA (927bp) protein (309aa)
type 11 methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
Methyltransferase type 11 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR68_CHIPD
Methyltransferase type 11 {ECO:0000313|EMBL:ACU64307.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_601_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17961..18389
DNA (429bp) protein (143aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL00_NIAKG
FKBP-type peptidylprolyl isomerase
SCNpilot_expt_500_bf_scaffold_601_21
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18486..19196
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368F1BB
MotA/TolQ/ExbB family membrane protein {ECO:0000313|EMBL:GAO45517.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
SCNpilot_expt_500_bf_scaffold_601_22
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19212..20267
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] rbh
dTDP-glucose 4,6-dehydratase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YGK8_9SPHI rbh
SCNpilot_expt_500_bf_scaffold_601_23
Leeuwenhoekiella blandensis, Leeuwenhoekiella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20268..20807
DNA (540bp) protein (180aa)
dtdp-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217) RepID=A3XR69_LEEBM
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EAQ47948.1}; TaxID=398720 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Leeuwenhoekiella.;" source="Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217); (Flavobacterium sp. (strain MED217)).;"
SCNpilot_expt_500_bf_scaffold_601_24
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

20811..21686
DNA (876bp) protein (292aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
glucose-1-phosphate thymidylyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003670214
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_expt_500_bf_scaffold_601_25
Tannerella sp. oral taxon BU063, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21754..22239
DNA (486bp) protein (162aa)
fdtC; dTDP-D-Fucp3N acetylase (EC:2.3.1.-)
dTDP-D-Fucp3N acetylase n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L4V7_ZOBGA
Hexapeptide transferase {ECO:0000313|EMBL:ETK01305.1}; TaxID=1411148 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. oral taxon BU063 isolate Cell 2.;"
SCNpilot_expt_500_bf_scaffold_601_26
Chryseobacterium vrystaatense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22236..23252
DNA (1017bp) protein (339aa)
oxidoreductase domain-containing protein; K13020 UDP-D-GlcNAcA oxidase [EC:1.1.1.-]
Oxidoreductase, NAD-binding domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W4Q7_9FLAO
Oxidoreductase {ECO:0000313|EMBL:KFF24560.1}; TaxID=307480 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium vrystaatense.;"
SCNpilot_expt_500_bf_scaffold_601_27
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23408..24229
DNA (822bp) protein (274aa)
Polysaccharide export outer membrane protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7VC36_9BACT
Soluble ligand binding domain; K01991 polysaccharide export outer membrane protein
Polysaccharide export outer membrane protein {ECO:0000313|EMBL:EPR67546.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
SCNpilot_expt_500_bf_scaffold_601_28
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24229..26586
DNA (2358bp) protein (786aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003698C80 rbh
Capsular biosynthesis protein {ECO:0000313|EMBL:AKD01938.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
capsular exopolysaccharide family protein
SCNpilot_expt_500_bf_scaffold_601_29
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

26653..27948
DNA (1296bp) protein (432aa)
UDP-N-acetyl-D-galactosamine dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-]
Vi polysaccharide biosynthesis protein vipA/tviB n=1 Tax=Flavobacterium rivuli RepID=UPI000364F5E1
UDP-N-acetyl-D-galactosamine dehydrogenase {ECO:0000313|EMBL:KIX19802.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
SCNpilot_expt_500_bf_scaffold_601_30
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27988..28992
DNA (1005bp) protein (335aa)
UDP-glucose 4-epimerase (EC:5.1.3.2) rbh
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CN94_9FLAO rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KFC21244.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
Displaying items 1-30 of 39 in total

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