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SCNpilot_expt_500_bf_scaffold_972

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_972_1
unknown

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comp(1..81)
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_972_2
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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280..1425
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000360AE11
Uncharacterized protein {ECO:0000313|EMBL:EGK05119.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein
SCNpilot_expt_500_bf_scaffold_972_3
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1968..4520
DNA (2553bp) protein (851aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI0003655A8C
Multidrug transporter AcrB {ECO:0000313|EMBL:KEQ30723.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hydrophobe/amphiphile efflux-1 (HAE1) family protein
SCNpilot_expt_500_bf_scaffold_972_4
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4504..5904
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000368349B
Uncharacterized protein {ECO:0000313|EMBL:EGK05121.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
NodT family RND efflux system outer membrane lipoprotein
SCNpilot_expt_500_bf_scaffold_972_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5908..7011
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00035F1197
signal transduction histidine kinase LytS
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:ACU63512.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_972_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7022..7777
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037FC74C
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ACU63511.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_972_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(8035..10104)
DNA (2070bp) protein (690aa)
Endothelin-converting enzyme 1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNI6_9SPHI rbh
Peptidase M13 {ECO:0000313|EMBL:AHF15270.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
putative metalloendopeptidase rbh
SCNpilot_expt_500_bf_scaffold_972_8
Capnocytophaga sp. oral taxon 863, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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10236..10682
DNA (447bp) protein (149aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1227266 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 863 str. F0517.;"
3-dehydroquinate dehydratase; K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Capnocytophaga sp. oral taxon 863 str. F0517 RepID=U2C8M0_9FLAO
SCNpilot_expt_500_bf_scaffold_972_9
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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10709..11410
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B35D3A
Uncharacterized protein {ECO:0000313|EMBL:KFF16090.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_972_10
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(11742..12350)
DNA (609bp) protein (203aa)
HD domain-containing protein 2 n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CMJ5_ELIME
Hydrolase {ECO:0000313|EMBL:KFF29479.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
HD domain-containing protein 2; K07023 putative hydrolases of HD superfamily
SCNpilot_expt_500_bf_scaffold_972_11
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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12595..13188
DNA (594bp) protein (198aa)
Nicotinamide mononucleotide transporter PnuC n=2 Tax=Myroides RepID=H1Z6K0_MYROD
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:EHQ44588.1}; Flags: Precursor;; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
nicotinamide mononucleotide transporter PnuC; K03811 nicotinamide mononucleotide transporter
SCNpilot_expt_500_bf_scaffold_972_12
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13256..14122
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VM18_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:EFK58023.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein; K09781 hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_972_13
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(14446..19884)
DNA (5439bp) protein (1813aa)
TonB-dependent receptor plug id=2159587 bin=GWE2_Bacteroidetes_40_63 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_63 organism_group=Bacteroidetes organism_desc=Good rbh
large extracellular alpha-helical protein
Tax=GWE2_Bacteroidetes_40_63_curated
SCNpilot_expt_500_bf_scaffold_972_14
unknown

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comp(19913..20341)
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_972_15
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(20486..26413)
DNA (5928bp) protein (1976aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00035F2C27
Uncharacterized protein {ECO:0000313|EMBL:KIF34266.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
large extracellular alpha-helical protein
SCNpilot_expt_500_bf_scaffold_972_16
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

26808..27827
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037C9C92
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH49003.1}; TaxID=945713 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 /; Mat9-16).;"
SCNpilot_expt_500_bf_scaffold_972_17
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27942..28904)
DNA (963bp) protein (321aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RQI8_LEAB4
fad-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ADQ16554.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_500_bf_scaffold_972_18
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28957..29349)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W2N4_9FLAO
MerC mercury resistance protein {ECO:0000313|EMBL:KFF16202.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_972_19
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(29973..31043)
DNA (1071bp) protein (357aa)
amino acid racemase n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237BAE6 rbh
amino acid racemase rbh
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_expt_500_bf_scaffold_972_20
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(31050..31490)
DNA (441bp) protein (147aa)
GNAT family acetyltransferase n=1 Tax=Pontibacter roseus RepID=UPI000382A059
Putative acetyltransferase {ECO:0000313|EMBL:EMR04800.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
acetyltransferase
SCNpilot_expt_500_bf_scaffold_972_21
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(31866..33026)
DNA (1161bp) protein (387aa)
Hypothetical lipoprotein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCZ6_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:KIC62922.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
hypothetical protein
Displaying 21 items

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