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SCNpilot_expt_500_bf_scaffold_996

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_996_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2..2200)
DNA (2199bp) protein (733aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037193F9
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
translation initiation factor 2 (bIF-2); K02519 translation initiation factor IF-2
SCNpilot_expt_500_bf_scaffold_996_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2362..3624)
DNA (1263bp) protein (421aa)
NusA antitermination factor n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHH1_CHIPD
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_996_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3675..4127)
DNA (453bp) protein (151aa)
Ribosome maturation factor RimP n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8W8_NIAKG
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Ribosome maturation factor rimP; K09748 ribosome maturation factor RimP
SCNpilot_expt_500_bf_scaffold_996_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4324..4671
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HUI1_9SPHI
transport-associated
Transport-associated {ECO:0000313|EMBL:ACU58446.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_996_5
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4815..5234
DNA (420bp) protein (140aa)
SH3 domain protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2FVQ5_9SPHI
SH3 domain protein {ECO:0000313|EMBL:EFK55995.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
SH3 type 3 domain-containing protein
SCNpilot_expt_500_bf_scaffold_996_6
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(5442..7025)
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037FDE95
Carbohydrate-binding protein SusD {ECO:0000313|EMBL:AKD03403.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
RagB/SusD domain-containing protein
SCNpilot_expt_500_bf_scaffold_996_7
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7081..7725)
DNA (645bp) protein (215aa)
TonB-dependent receptor plug n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6X8_PALPW
tonb-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADQ80472.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
SCNpilot_expt_500_bf_scaffold_996_8
Parabacteroides sp. HGS0025, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7722..10295)
DNA (2574bp) protein (858aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Odoribacter sp. CAG:788 RepID=R5NY81_9PORP
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:KKB45766.1}; Flags: Fragment;; TaxID=1078087 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. HGS0025.;"
TonB-dependent receptor plug
SCNpilot_expt_500_bf_scaffold_996_9
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(10430..12277)
DNA (1848bp) protein (616aa)
Lysyl endopeptidase id=3981477 bin=GWF2_Bacteroidetes_38_335 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
secreted trypsin-like lysyl endopeptidase, Por secretion system C-terminal sorting domain protein
Tax=GWA2_Bacteroidetes_31_9_curated
SCNpilot_expt_500_bf_scaffold_996_10
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12576..13247
DNA (672bp) protein (224aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
pseudouridine synthase; K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
Pseudouridine synthase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EAH1_RUNSL
SCNpilot_expt_500_bf_scaffold_996_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13338..14195
DNA (858bp) protein (286aa)
Metallophosphoesterase n=2 Tax=Elizabethkingia anophelis RepID=H0KQT4_9FLAO
metallophosphoesterase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_996_12
Flavobacteria bacterium BAL38, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14205..15209
DNA (1005bp) protein (335aa)
Glycosyltransferase-distantly-related protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J1F1_9FLAO
Glycosyltransferase-distantly-related protein {ECO:0000313|EMBL:EAZ96108.1}; TaxID=391598 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteria bacterium BAL38.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_996_13
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15280..17175)
DNA (1896bp) protein (632aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00034658AE rbh
aminopeptidase N rbh
Aminopeptidase N {ECO:0000313|EMBL:AFD08919.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_expt_500_bf_scaffold_996_14
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17322..17915
DNA (594bp) protein (198aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J0H1_CYCMS
Crp/Fnr family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AEL23887.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCNpilot_expt_500_bf_scaffold_996_15
unknown

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17998..18570
DNA (573bp) protein (191aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_996_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18908..20182
DNA (1275bp) protein (425aa)
Cytochrome c class I n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG44_CHIPD
Cytochrome C {ECO:0000313|EMBL:KIC96455.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
cytochrome C class I
SCNpilot_expt_500_bf_scaffold_996_17
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20255..22834
DNA (2580bp) protein (860aa)
iron-sulfur binding oxidoreductase; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-]
Putative iron-sulfur binding oxidoreductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG43_CHIPD
Putative iron-sulfur binding oxidoreductase {ECO:0000313|EMBL:ACU58026.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_996_18
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22840..23361
DNA (522bp) protein (174aa)
iron-sulfur binding oxidoreductase; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003799C13
[Fe-S]-binding protein {ECO:0000313|EMBL:KIC91101.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
SCNpilot_expt_500_bf_scaffold_996_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23817..24086
DNA (270bp) protein (90aa)
polysulfide reductase NrfD; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-]
Polysulphide reductase NrfD n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PG42_CHIPD
Polysulphide reductase NrfD {ECO:0000313|EMBL:ACU58025.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying 19 items

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