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SCNpilot_expt_500_bf_scaffold_1388

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1388_1
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(1..426)
DNA (426bp) protein (142aa)
Cell division protein FtsK/SpoIIIE n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFR3_FLUTR
cell division protein FtsK/SpoIIIE; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_500_bf_scaffold_1388_2
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(539..1219)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00035CF65F
Contig16, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78348.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1388_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1219..2595)
DNA (1377bp) protein (459aa)
DNA repair protein radA n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK35_CHIPD
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_1388_4
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(2684..3028)
DNA (345bp) protein (115aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=1225176 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cecembia.;" source="Cecembia lonarensis LW9.;"
aspartate 1-decarboxylase; K01579 aspartate 1-decarboxylase [EC:4.1.1.11]
Aspartate 1-decarboxylase n=1 Tax=Cecembia lonarensis LW9 RepID=K1L718_9BACT
SCNpilot_expt_500_bf_scaffold_1388_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3225..4121
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSI4_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64433.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_1388_6
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4185..4877)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037CB650
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU06069.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_500_bf_scaffold_1388_7
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

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comp(4991..5749)
DNA (759bp) protein (253aa)
Uncharacterized protein id=2720759 bin=GWF1_Flavobacteria_32_7 species=Ornithobacterium rhinotracheale genus=Ornithobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes rbh
hypothetical protein
Tax=GWF1_Flavobacteria_32_7_curated
SCNpilot_expt_500_bf_scaffold_1388_8
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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5942..7618
DNA (1677bp) protein (559aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K11942 methylmalonyl-CoA mutase [EC:5.4.99.2]
Methylmalonyl-CoA mutase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JPA1_9BACT
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:ELR70038.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
SCNpilot_expt_500_bf_scaffold_1388_9
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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7638..9302
DNA (1665bp) protein (555aa)
methylmalonyl-CoA mutase n=1 Tax=Hymenobacter aerophilus RepID=UPI00036E7FD0
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:AKD04569.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
methylmalonyl-CoA mutase family protein
SCNpilot_expt_500_bf_scaffold_1388_10
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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9488..9745
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TKL8_MARTH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADR21184.1}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
SCNpilot_expt_500_bf_scaffold_1388_11
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

9742..10158
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SAC2_PEDSD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCNpilot_expt_500_bf_scaffold_1388_12
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10155..10703
DNA (549bp) protein (183aa)
Uncharacterized protein id=2920122 bin=GWF1_Flavobacteria_32_7 species=Myroides odoratimimus genus=Myroides taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
2',5' RNA ligase
Tax=GWF1_Flavobacteria_32_7_curated
SCNpilot_expt_500_bf_scaffold_1388_13
unknown

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10953..11342
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1388_14
unknown

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comp(11419..11526)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1388_15
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11548..12594
DNA (1047bp) protein (349aa)
RND family efflux transporter MFP subunit n=1 Tax=Flavobacterium sp. F52 RepID=J1KPE2_9FLAO
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:EJF99680.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein
SCNpilot_expt_500_bf_scaffold_1388_16
unknown

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comp(12642..13043)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1388_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13775..15772
DNA (1998bp) protein (666aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNK4_SOLCM
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
Putative RND-type efflux pump membrane protein {ECO:0000313|EMBL:GAO41900.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_500_bf_scaffold_1388_18
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15765..17195
DNA (1431bp) protein (477aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PTN5_CHIPD
Putative RND-type efflux pump outer membrane protein {ECO:0000313|EMBL:GAO41901.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
NodT family RND efflux system outer membrane lipoprotein
SCNpilot_expt_500_bf_scaffold_1388_19
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists

17546..19768
DNA (2223bp) protein (741aa)
PKD domain containing protein id=4096970 bin=GWF2_Bacteroidetes_35_48 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
PKD domain-containing protein
Tax=CG_Bacteroid_02
SCNpilot_expt_500_bf_scaffold_1388_20
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19928..20530
DNA (603bp) protein (201aa)
Uncharacterized protein n=2 Tax=Elizabethkingia meningoseptica RepID=R9CKY9_ELIME
Uncharacterized protein {ECO:0000313|EMBL:AJW64017.1}; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1388_21
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20562..22715
DNA (2154bp) protein (718aa)
dipeptidyl-peptidase IV; K01278 dipeptidyl-peptidase 4 [EC:3.4.14.5]
Dipeptidyl-peptidase IV n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CEC6_SPHS2
Tax=BJP_08E140C01_Bacteriodales_41_10
SCNpilot_expt_500_bf_scaffold_1388_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22946..23668
DNA (723bp) protein (241aa)
Peptide chain release factor 1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMI7_NIAKG
peptide chain release factor 1 (bRF-1); K02835 peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_1388_23
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23722..23985
DNA (264bp) protein (88aa)
Peptide chain release factor 1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFV5_CHIPD
peptide chain release factor 1; K02835 peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_1388_24
unknown

Not on your lists

24034..24987
DNA (954bp) protein (318aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1388_25
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24987..26444
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B56271
Uncharacterized protein {ECO:0000313|EMBL:AII50574.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
O-antigen polymerase
SCNpilot_expt_500_bf_scaffold_1388_26
unknown

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comp(26436..26966)
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1388_27

Not on your lists

comp(26976..27482)
DNA (507bp) protein (169aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
dfrA; Dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=uncultured bacterium RepID=F8UVU7_9BACT
SCNpilot_expt_500_bf_scaffold_1388_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(27485..28015)
DNA (531bp) protein (177aa)
Possible acyl-CoA thioester hydrolase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJQ5_9SPHI
thioesterase superfamily protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_1388_29
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28021..28662)
DNA (642bp) protein (214aa)
peptidase M22 glycoprotease; K14742 hypothetical protease [EC:3.4.-.-]
Metal-dependent protease {ECO:0000313|EMBL:GAO29388.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
Universal bacterial protein YeaZ id=4535076 bin=GWF2_Bacteroidetes_35_48 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
SCNpilot_expt_500_bf_scaffold_1388_30
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(28777..29157)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Imtechella halotolerans K1 RepID=I0WH25_9FLAO
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
Displaying items 1-30 of 36 in total

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