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SCNpilot_expt_500_bf_scaffold_1413

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1413_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2..2809
DNA (2808bp) protein (936aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUG7_CHIPD
SCNpilot_expt_500_bf_scaffold_1413_2
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3016..3816
DNA (801bp) protein (267aa)
Uncharacterized protein n=2 Tax=Myroides RepID=K1I8M4_9FLAO rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ44383.1}; Flags: Precursor;; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
SCNpilot_expt_500_bf_scaffold_1413_3
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3997..5160
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VP46_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:EFK57693.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1413_4
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

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5470..6402
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00037D4D57
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
SCNpilot_expt_500_bf_scaffold_1413_5
unknown

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6473..6613
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1413_6
unknown

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comp(6749..7072)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1413_7
unknown

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comp(7259..7666)
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1413_8
unknown

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comp(7932..8375)
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1413_9
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(8457..9194)
DNA (738bp) protein (246aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y5P1_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ29817.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1413_10

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comp(9202..10362)
DNA (1161bp) protein (387aa)
Marine sediment metagenome DNA, contig: S12H4_S24624 {ECO:0000313|EMBL:GAJ17399.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_500_bf_scaffold_1413_11
Mollicutes bacterium HR2, Mollicutes, Tenericutes, Bacteria

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10754..11263
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B2S4_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KFZ25523.1}; TaxID=1541960 species="Bacteria; Tenericutes; Mollicutes.;" source="Mollicutes bacterium HR2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1413_12
unknown

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comp(11510..12322)
DNA (813bp) protein (271aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1413_13
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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12468..12857
DNA (390bp) protein (130aa)
Helix-turn-helix domain protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EWR5_EMTOG
helix-turn-helix domain protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AFK04118.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
SCNpilot_expt_500_bf_scaffold_1413_14
unknown

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12914..13273
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1413_15
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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13997..14482
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SQF3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO89811.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1413_16
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

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comp(14613..15890)
DNA (1278bp) protein (426aa)
PDK repeat-containing protein id=4606124 bin=GWF2_Bacteroidetes_43_63 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77 rbh
PDK repeat-containing protein rbh
Tax=GWF2_Bacteroidetes_43_63_curated
SCNpilot_expt_500_bf_scaffold_1413_17
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15961..16617)
DNA (657bp) protein (219aa)
Transcriptional regulator, TetR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMX8_CHIPD
Bacterial regulatory proteins, tetR family {ECO:0000313|EMBL:CEJ69010.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
TetR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1413_18
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16898..18295
DNA (1398bp) protein (466aa)
Beta-lactamase {ECO:0000313|EMBL:EFK56903.1}; EC=3.5.2.6 {ECO:0000313|EMBL:EFK56903.1};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
Beta-lactamase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VT02_9SPHI
pbpE; PbpE
SCNpilot_expt_500_bf_scaffold_1413_19
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19352..19684)
DNA (333bp) protein (111aa)
acetyl-CoA carboxylase, biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSX9_CHIPD
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:ACU59018.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying 19 items

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