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SCNpilot_expt_500_bf_scaffold_3318

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3318_1
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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188..568
DNA (381bp) protein (127aa)
Endoribonuclease L-PSP n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL96_CHIPD
Endoribonuclease L-PSP {ECO:0000313|EMBL:KGE14419.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
endoribonuclease L-PSP; K07567 TdcF protein
SCNpilot_expt_500_bf_scaffold_3318_2
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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737..2212
DNA (1476bp) protein (492aa)
DNA topoisomerase III n=1 Tax=Chryseobacterium sp. CF314 RepID=J2K590_9FLAO
DNA topoisomerase 3 {ECO:0000313|EMBL:CEJ68626.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
DNA topoisomerase III
SCNpilot_expt_500_bf_scaffold_3318_3
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2196..2876
DNA (681bp) protein (227aa)
DNA topoisomerase III n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0PTN7_ELIME
DNA topoisomerase III {ECO:0000313|EMBL:KFE98067.1}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium formosense.;"
DNA topoisomerase III
SCNpilot_expt_500_bf_scaffold_3318_4
unknown

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2940..3449
DNA (510bp) protein (170aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3318_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3514..4587)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRM4_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58917.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_3318_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4610..5110)
DNA (501bp) protein (167aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRM3_CHIPD
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:ACU58916.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_3318_7
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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5159..6328
DNA (1170bp) protein (390aa)
Methyltransferase type 12 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAY6_CHIPD
O-methyltransferase {ECO:0000313|EMBL:GAL86217.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
type 12 methyltransferase
SCNpilot_expt_500_bf_scaffold_3318_8
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6366..7601
DNA (1236bp) protein (412aa)
Tryptophan halogenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAY7_CHIPD
Putative oxidoreductase {ECO:0000313|EMBL:GAO42087.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
tryptophan halogenase
SCNpilot_expt_500_bf_scaffold_3318_9
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7601..8155
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y1H7_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30851.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3318_10
unknown

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8196..8558
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3318_11
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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8576..8902
DNA (327bp) protein (109aa)
O-6-alkylguanine-DNA:cysteine-protein methyltransferase n=1 Tax=Cecembia lonarensis LW9 RepID=K1M4B9_9BACT
O-6-alkylguanine-DNA:cysteine-protein methyltransferase {ECO:0000313|EMBL:EKB51099.1}; TaxID=1225176 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cecembia.;" source="Cecembia lonarensis LW9.;"
methylated-DNA-(protein)-cysteine s-methyltransferase DNA binding protein; K07443 methylated-DNA-protein-cysteine methyltransferase related protein
SCNpilot_expt_500_bf_scaffold_3318_12
unknown

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9259..9651
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3318_13
unknown

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9951..10592
DNA (642bp) protein (214aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3318_14
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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10627..11706
DNA (1080bp) protein (360aa)
Secreted protein containing PKD domains id=3990907 bin=GWF2_Bacteroidetes_38_335 species=Nonlabens dokdonensis genus=Nonlabens taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
hypothetical protein
Tax=GWF2_Bacteroidetes_38_335_curated
SCNpilot_expt_500_bf_scaffold_3318_15
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12221..13888
DNA (1668bp) protein (556aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Glutamine--tRNA ligase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KL89_SOLCM rbh
glutaminyl-tRNA synthetase rbh
SCNpilot_expt_500_bf_scaffold_3318_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13984..14712
DNA (729bp) protein (243aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAX8_CHIPD
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU59350.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_3318_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


14878..16110
DNA (1233bp) protein (411aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartate--tRNA ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK97_NIAKG
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:GAO44833.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Displaying 17 items

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