ggKbase home page

SCNpilot_expt_500_bf_scaffold_2272

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2272_1
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..515)
DNA (513bp) protein (171aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
phosphoribosylformylglycinamidine synthase; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Putative phosphoribosylformylglycinamidine synthase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VKD2_9SPHI
SCNpilot_expt_500_bf_scaffold_2272_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(924..1541)
DNA (618bp) protein (206aa)
ABC transporter ATP-binding protein n=1 Tax=Niabella aurantiaca RepID=UPI000372E7E0
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF16536.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
multidrug ABC transporter ATPase
SCNpilot_expt_500_bf_scaffold_2272_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1531..2328)
DNA (798bp) protein (266aa)
UDP-N-acetylglucosamine acyltransferase; K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] rbh
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ87_CHIPD rbh
SCNpilot_expt_500_bf_scaffold_2272_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2350..2679)
DNA (330bp) protein (110aa)
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase; K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-]; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00041386};; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064862};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|SAAS:SAAS00064869}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
UDP-3-0-acyl N-acetylglucosamine deacetylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ88_CHIPD
SCNpilot_expt_500_bf_scaffold_2272_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3827..4876)
DNA (1050bp) protein (350aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP64_NIAKG
SCNpilot_expt_500_bf_scaffold_2272_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4898..6133)
DNA (1236bp) protein (412aa)
Metal dependent phosphohydrolase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ90_CHIPD
metal dependent phosphohydrolase; K06885
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ACU58779.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2272_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

6269..6847
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003693EC8
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_bf_scaffold_2272_8
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6945..7688)
DNA (744bp) protein (248aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YDH0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO42712.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2272_9
unknown

Not on your lists

comp(7838..8686)
DNA (849bp) protein (283aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2272_10
unknown

Not on your lists

comp(8698..8952)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2272_11
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9160..9618)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NPT6_9SPHI
Transcriptional regulator {ECO:0000313|EMBL:KEO75240.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2272_12
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9883..10317
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VRX3_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK56524.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
SCNpilot_expt_500_bf_scaffold_2272_13
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11159..11812
DNA (654bp) protein (218aa)
GntR family transcriptional regulator n=1 Tax=Sphingobacterium paucimobilis RepID=UPI0003B2E684
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KGE15073.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
GntR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2272_14
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13132..13659)
DNA (528bp) protein (176aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
nbaC; 3-hydroxyanthranilate 3,4-dioxygenase (EC:1.13.11.6); K00452 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B4D1CA
SCNpilot_expt_500_bf_scaffold_2272_15
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13815..15866
DNA (2052bp) protein (684aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003673D37
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64004.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2272_16
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15863..16195)
DNA (333bp) protein (111aa)
ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4]
ribonuclease HI n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002DB5A22
Ribonuclease HI {ECO:0000313|EMBL:KJF42802.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
SCNpilot_expt_500_bf_scaffold_2272_17
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16387..17133
DNA (747bp) protein (249aa)
Chorismate dehydratase {ECO:0000256|HAMAP-Rule:MF_00995}; EC=4.2.1.151 {ECO:0000256|HAMAP-Rule:MF_00995};; Menaquinone biosynthetic enzyme MqnA {ECO:0000256|HAMAP-Rule:MF_00995}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDZ9_CHIPD
hypothetical protein; K07081
SCNpilot_expt_500_bf_scaffold_2272_18
unknown

Not on your lists

comp(17125..18432)
DNA (1308bp) protein (436aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2272_19
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18433..20496)
DNA (2064bp) protein (688aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIC1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIA93357.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2272_20
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20512..21189)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJC8_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIA93358.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2272_21
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(21299..21547)
DNA (249bp) protein (83aa)
50S ribosomal protein L31 id=2291699 bin=GWB2_Bacteroidetes_32_14 species=unknown genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
Tax=GWD2_Bacteroidetes_33_33_curated
SCNpilot_expt_500_bf_scaffold_2272_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21668..22228)
DNA (561bp) protein (187aa)
transketolase; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
Transketolase central region n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSZ6_CHIPD
Transketolase central region {ECO:0000313|EMBL:ACU59035.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying 22 items

View Taxonomy