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SCNpilot_expt_500_bf_scaffold_2283

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2283_1
unknown

Not on your lists

comp(2..478)
-----------------
DNA (477bp)
protein (159aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2283_2
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(624..1136)
-----------------
DNA (513bp)
protein (171aa)
Response regulator receiver protein {ECO:0000313|EMBL:GAL86714.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
Response regulator of Zn/Pb responsive two-component regulatory system id=4816212 bin=GWA2_Bacteroidetes_42_15 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
response regulator receiver protein
SCNpilot_expt_500_bf_scaffold_2283_3
Flavobacteriales bacterium ALC-1, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1229..2551)
-----------------
DNA (1323bp)
protein (441aa)
methylmalonyl-CoA mutase small subunit; K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Putative methylmalonyl-CoA mutase small subunit n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UKK9_9FLAO
Putative methylmalonyl-CoA mutase small subunit {ECO:0000313|EMBL:EDP70291.1}; TaxID=391603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium ALC-1.;"
SCNpilot_expt_500_bf_scaffold_2283_4
Nonlabens dokdonensis, Nonlabens, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2566..2967)
-----------------
DNA (402bp)
protein (134aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029AD727
protein containing DUF393
Protein containing DUF393 {ECO:0000313|EMBL:AGC78362.1}; TaxID=592029 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.;" source="Nonlabens dokdonensis (strain DSM 17205 / KCTC 12402 / DSW-6); (Donghaeana dokdonensis).;"
SCNpilot_expt_500_bf_scaffold_2283_5
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2987..4030)
-----------------
DNA (1044bp)
protein (348aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-galactose-4-epimerase n=1 Tax=Niabella aurantiaca RepID=UPI000381CF7C
UDP-glucose 4-epimerase {ECO:0000313|EMBL:GAO45094.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_500_bf_scaffold_2283_6
unknown

Not on your lists

4247..4405
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2283_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4457..5605)
-----------------
DNA (1149bp)
protein (383aa)
lytic transglycosylase; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQE3_CHIPD
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ACU58832.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2283_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5840..6064)
-----------------
DNA (225bp)
protein (75aa)
Sec-independent translocation protein mttA/Hcf106 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJT2_NIAKG
sec-independent translocation protein mttA/Hcf106; K03116 sec-independent protein translocase protein TatA
Sec-independent translocation protein mttA/Hcf106 {ECO:0000313|EMBL:AEW01830.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_2283_9
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6167..7984)
-----------------
DNA (1818bp)
protein (606aa)
Phage shock protein C, PspC n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF31_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO42376.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
phage shock protein C, PspC
SCNpilot_expt_500_bf_scaffold_2283_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7990..8322)
-----------------
DNA (333bp)
protein (111aa)
Transcriptional regulator, PadR family n=1 Tax=Niabella soli DSM 19437 RepID=H1NTI3_9SPHI
PadR family transcriptional regulator {ECO:0000313|EMBL:AHF16137.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
PadR family transcriptional regulator; K10947 PadR family transcriptional regulator, regulatory protein PadR
SCNpilot_expt_500_bf_scaffold_2283_11
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8365..8709)
-----------------
DNA (345bp)
protein (115aa)
Membrane protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NV69_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM36590.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2283_12
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8878..9267
-----------------
DNA (390bp)
protein (130aa)
Thioesterase superfamily protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IGF3_FLUTR
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:AEA45819.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_500_bf_scaffold_2283_13
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9411..11606)
-----------------
DNA (2196bp)
protein (732aa)
iron dicitrate transporter n=1 Tax=Spirosoma spitsbergense RepID=UPI00037A3405 rbh
Iron dicitrate transporter {ECO:0000313|EMBL:AKD58764.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_2283_14
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11606..12874)
-----------------
DNA (1269bp)
protein (423aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI000368EA4E rbh
Deoxyribonuclease HsdR {ECO:0000313|EMBL:KJJ37563.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vladivostokensis.;"
Vitamin K-dependent gamma-carboxylase rbh
SCNpilot_expt_500_bf_scaffold_2283_15
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12999..14198)
-----------------
DNA (1200bp)
protein (400aa)
Peptidase M75, Imelysin n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QNH4_SPILD
Peptidase M75,Imelysin {ECO:0000313|EMBL:GAL85494.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
peptidase M75, Imelysin
SCNpilot_expt_500_bf_scaffold_2283_16
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14295..14843)
-----------------
DNA (549bp)
protein (183aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00036CC693
Uncharacterized protein {ECO:0000313|EMBL:AKD57572.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2283_17
Zhouia amylolytica, Zhouia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14803..15351)
-----------------
DNA (549bp)
protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:ETN97016.1}; TaxID=1286632 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zhouia.;" source="Zhouia amylolytica AD3.;"
SCNpilot_expt_500_bf_scaffold_2283_18
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15496..16812)
-----------------
DNA (1317bp)
protein (439aa)
dehydrogenase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI59_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC94488.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_500_bf_scaffold_2283_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17013..17879)
-----------------
DNA (867bp)
protein (289aa)
MscS Mechanosensitive ion channel n=1 Tax=Niabella soli DSM 19437 RepID=H1NKW8_9SPHI rbh
Mechanosensitive ion channel protein {ECO:0000313|EMBL:AHF14385.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
small-conductance mechanosensitive channel; K03442 small conductance mechanosensitive channel
SCNpilot_expt_500_bf_scaffold_2283_20
unknown

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comp(18163..18921)
-----------------
DNA (759bp)
protein (253aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2283_21
unknown

Not on your lists

comp(18943..20028)
-----------------
DNA (1086bp)
protein (362aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2283_22
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

20518..21333
-----------------
DNA (816bp)
protein (272aa)
Outer membrane assembly lipoprotein YfiO n=1 Tax=Niabella soli DSM 19437 RepID=H1NSV9_9SPHI
outer membrane assembly lipoprotein YfiO; K05807 putative lipoprotein
Tax=BJP_IG2102_Bacteroidetes_40_9
SCNpilot_expt_500_bf_scaffold_2283_23
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21320..21640
-----------------
DNA (321bp)
protein (107aa)
DNA-directed RNA polymerase, omega subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRC9_CHIPD
DNA-directed RNA polymerase subunit omega
DNA-directed RNA polymerase, omega subunit {ECO:0000313|EMBL:ACU64368.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2283_24
unknown

Not on your lists

comp(21715..22056)
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2283_25
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22043..22618)
-----------------
DNA (576bp)
protein (192aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUW3_CHIPD
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU62872.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2283_26
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22700..23356)
-----------------
DNA (657bp)
protein (219aa)
Uncharacterized protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BEN9_ZUNPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADF50768.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
SCNpilot_expt_500_bf_scaffold_2283_27
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23391..23534)
-----------------
DNA (144bp)
protein (48aa)
Conserved repeat domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S5P7_PEDSD
hypothetical protein
Conserved repeat domain protein {ECO:0000313|EMBL:ADY54221.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
Displaying 27 items

View Taxonomy