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SCNpilot_expt_500_bf_scaffold_2586

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2586_1
unknown

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comp(2..349)
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2586_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(458..1339)
DNA (882bp) protein (294aa)
30S ribosomal protein S2 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK39_CHIPD
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2586_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1408..1797)
DNA (390bp) protein (130aa)
30S ribosomal protein S9 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK38_CHIPD
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|RuleBase:RU003816}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_bf_scaffold_2586_4
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1837..2286)
DNA (450bp) protein (150aa)
50S ribosomal protein L13 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK37_CHIPD
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
SCNpilot_expt_500_bf_scaffold_2586_5
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2581..3081)
DNA (501bp) protein (167aa)
hypothetical protein; K05982 deoxyribonuclease V [EC:3.1.21.7]
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L0D9_HALH1
Uncharacterized protein {ECO:0000313|EMBL:AEE53812.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_500_bf_scaffold_2586_6
unknown

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comp(3129..4487)
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000368CEAD
SCNpilot_expt_500_bf_scaffold_2586_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4556..5113)
DNA (558bp) protein (186aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI78_NIAKG
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:AEW00695.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_bf_scaffold_2586_8
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(5248..6141)
DNA (894bp) protein (298aa)
pirin n=1 Tax=Cytophaga aurantiaca RepID=UPI00035CA3D6 rbh
Pirin family protein {ECO:0000313|EMBL:ESU18966.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
pirin-like protein; K06911 rbh
SCNpilot_expt_500_bf_scaffold_2586_9
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6214..6798)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HW74_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ59510.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
Crp/Fnr family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2586_10
unknown

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6847..6990
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2586_11
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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7128..8648
DNA (1521bp) protein (507aa)
2-oxoisovalerate dehydrogenase E1; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit n=2 Tax=Elizabethkingia anophelis RepID=H0KXA6_9FLAO
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha/beta subunit {ECO:0000313|EMBL:AIL46500.1}; TaxID=1338011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis NUHP1.;"
Displaying 11 items

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